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Report for CCDS5355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5355.1 Public Homo sapiens 7 C1GALT1 24 110 108 CCDS HistoryNCBI Gene:56913Re-query CCDS DB by CCDS ID:5355.1Re-query CCDS DB by GeneID:56913See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5355.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223122.4 ENSP00000223122.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000223122.4Link to Ensembl Protein Viewer:ENSP00000223122.2Re-query CCDS DB by Nucleotide ID:ENST00000223122Re-query CCDS DB by Protein ID:ENSP00000223122
Original member Current member EBI ENST00000436587.7 ENSP00000389176.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000436587.7Link to Ensembl Protein Viewer:ENSP00000389176.2Re-query CCDS DB by Nucleotide ID:ENST00000436587Re-query CCDS DB by Protein ID:ENSP00000389176
Original member Current member NCBI NM_020156.5 NP_064541.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020156.5Link to Protein Sequence:NP_064541.1Re-query CCDS DB by Nucleotide ID:NM_020156Re-query CCDS DB by Protein ID:NP_064541Link to BLAST:NP_064541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064541.1 363 Q9NS00-1 363 100% 0 0

Chromosomal Locations for CCDS 5355.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 7234320 7234539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7238255 7238922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 7243524 7243727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGCCTCTAAATCCTGGCTGAATTTTTTAACCTTCCTCTGTGGATCAGCAATAGGATTTCTTTTATGTT
CTCAGCTATTTAGTATTTTGTTGGGAGAAAAGGTTGACACCCAGCCTAATGTTCTTCATAATGATCCTCA
TGCAAGGCATTCAGATGATAATGGACAGAATCATCTAGAAGGACAAATGAACTTCAATGCAGATTCTAGC
CAACATAAAGATGAGAACACAGACATTGCTGAAAACCTCTATCAGAAAGTTAGAATTCTTTGCTGGGTTA
TGACCGGCCCTCAAAACCTAGAGAAAAAGGCCAAACACGTCAAAGCTACTTGGGCCCAGCGTTGTAACAA
AGTGTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTGCTGTGGGACTGAAAACCAAAGAAGGCAGA
GATCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGAACATTATTTAGAAGATGCTGATT
GGTTTTTGAAAGCAGATGATGACACGTATGTCATACTAGACAATTTGAGGTGGCTTCTTTCAAAATACGA
CCCTGAAGAACCCATTTACTTTGGGAGAAGATTTAAGCCTTATGTAAAGCAGGGCTACATGAGTGGAGGA
GCAGGATATGTACTAAGCAAAGAAGCCTTGAAAAGATTTGTTGATGCATTTAAAACAGACAAGTGTACAC
ATAGTTCCTCCATTGAAGACTTAGCACTGGGGAGATGCATGGAAATTATGAATGTAGAAGCAGGAGATTC
CAGAGATACCATTGGAAAAGAAACTTTTCATCCCTTTGTGCCAGAACACCATTTAATTAAAGGTTATCTA
CCTAGAACGTTTTGGTACTGGAATTACAACTATTATCCTCCTGTAGAGGGTCCTGGTTGCTGCTCTGATC
TTGCAGTTTCTTTTCACTATGTTGATTCTACAACCATGTATGAGTTAGAATACCTCGTTTATCATCTTCG
TCCATATGGTTATTTATACAGATATCAACCTACCTTACCTGAACGTATACTAAAGGAAATTAGTCAAGCA
AACAAAAATGAAGATACAAAAGTGAAGTTAGGAAATCCTTGA

Translation (363 aa):
MASKSWLNFLTFLCGSAIGFLLCSQLFSILLGEKVDTQPNVLHNDPHARHSDDNGQNHLEGQMNFNADSS
QHKDENTDIAENLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPAVGLKTKEGR
DQLYWKTIKAFQYVHEHYLEDADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGRRFKPYVKQGYMSGG
AGYVLSKEALKRFVDAFKTDKCTHSSSIEDLALGRCMEIMNVEAGDSRDTIGKETFHPFVPEHHLIKGYL
PRTFWYWNYNYYPPVEGPGCCSDLAVSFHYVDSTTMYELEYLVYHLRPYGYLYRYQPTLPERILKEISQA
NKNEDTKVKLGNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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