NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54140.1 Public Homo sapiens 17 B4GALNT2 24 110 108 CCDS HistoryNCBI Gene:124872Re-query CCDS DB by CCDS ID:54140.1Re-query CCDS DB by GeneID:124872See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504681.5 ENSP00000425510.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504681.5Link to Ensembl Protein Viewer:ENSP00000425510.1Re-query CCDS DB by Nucleotide ID:ENST00000504681Re-query CCDS DB by Protein ID:ENSP00000425510
Original member Current member NCBI NM_001159388.2 NP_001152860.1 Accepted alive Link to Nucleotide Sequence:NM_001159388.2Link to Protein Sequence:NP_001152860.1Re-query CCDS DB by Nucleotide ID:NM_001159388Re-query CCDS DB by Protein ID:NP_001152860Link to BLAST:NP_001152860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152860.1 480 Q8NHY0-3 480 100% 0 0

Chromosomal Locations for CCDS 54140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49141311 49141447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49142035 49142172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49152800 49152906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49156566 49156603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49159037 49159217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49160555 49160641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49164088 49164275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49166114 49166254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49168681 49168900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49169523 49169728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGTTCGGAAGCATGTTCCTTCAAGCAGTGTTCAGCAGCCCCAAGCCAGAACTCCCAAGTCCTGCCCCGG
GTGTCCAGAAGCTGAAGCTTCTGCCTGAGGAACGTCTCAGGAACCTCTTTTCCTACGATGGAATCTGGCT
GTTCCCGAAAAATCAGTGCAAATGTGAAGCCAACAAAGAGCAGGGAGGTTACAACTTTCAGGATGCCTAT
GGCCAGAGCGACCTCCCAGCGGTGAAAGCGAGGAGACAGGCTGAATTTGAACACTTTCAGAGGAGAGAAG
GGCTGCCCCGCCCACTGCCCCTGCTGGTCCAGCCCAACCTCCCCTTTGGGTACCCAGTCCACGGAGTGGA
GGTGATGCCCCTGCACACGGTTCCCATCCCAGGCCTCCAGTTTGAAGGACCCGATGCCCCCGTCTATGAG
GTCACCCTGACAGCTTCTCTGGGGACACTGAACACCCTTGCTGATGTCCCAGACAGTGTGGTGCAGGGCA
GAGGCCAGAAGCAGCTGATCATTTCTACCAGTGACCGGAAGCTGTTGAAGTTCATTCTTCAGCACGTGAC
ATACACCAGCACGGGGTACCAGCACCAGAAGGTAGACATAGTGAGTCTGGAGTCCAGGTCCTCAGTGGCC
AAGTTTCCAGTGACCATCCGCCATCCTGTCATACCCAAGCTATACGACCCTGGACCAGAGAGGAAGCTCA
GAAACCTGGTTACCATTGCTACCAAGACTTTCCTCCGCCCCCACAAGCTCATGATCATGCTCCGGAGTAT
TCGAGAGTATTACCCAGACTTGACCGTAATAGTGGCTGATGACAGCCAGAAGCCCCTGGAAATTAAAGAC
AATCACGTGGAGTATTACACTATGCCCTTTGGGAAGGGTTGGTTTGCTGGTAGGAACCTGGCCATATCTC
AGGTCACCACCAAATACGTTCTCTGGGTGGACGATGATTTTCTCTTCAACGAGGAGACCAAGATTGAGGT
GCTGGTGGATGTCCTGGAGAAAACAGAACTGGACGTGGTAGGCGGCAGTGTGCTGGGAAATGTGTTCCAG
TTTAAGTTGTTGCTGGAACAGAGTGAGAATGGGGCCTGCCTTCACAAGAGGATGGGATTTTTCCAACCCC
TGGATGGCTTCCCCAGCTGCGTGGTGACCAGTGGCGTGGTCAACTTCTTCCTGGCCCACACGGAGCGACT
CCAAAGAGTTGGCTTTGATCCCCGCCTGCAACGAGTGGCTCACTCAGAATTCTTCATTGATGGGCTAGGG
ACCCTACTCGTGGGGTCATGCCCAGAAGTGATTATAGGTCACCAGTCTCGGTCTCCAGTGGTGGACTCAG
AACTGGCTGCCCTAGAGAAGACCTACAATACATACCGGTCCAACACCCTCACCCGGGTCCAGTTCAAGCT
GGCCCTCCACTACTTCAAGAACCATCTCCAATGTGCCGCATAA

Translation (480 aa):
MFGSMFLQAVFSSPKPELPSPAPGVQKLKLLPEERLRNLFSYDGIWLFPKNQCKCEANKEQGGYNFQDAY
GQSDLPAVKARRQAEFEHFQRREGLPRPLPLLVQPNLPFGYPVHGVEVMPLHTVPIPGLQFEGPDAPVYE
VTLTASLGTLNTLADVPDSVVQGRGQKQLIISTSDRKLLKFILQHVTYTSTGYQHQKVDIVSLESRSSVA
KFPVTIRHPVIPKLYDPGPERKLRNLVTIATKTFLRPHKLMIMLRSIREYYPDLTVIVADDSQKPLEIKD
NHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFNEETKIEVLVDVLEKTELDVVGGSVLGNVFQ
FKLLLEQSENGACLHKRMGFFQPLDGFPSCVVTSGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFIDGLG
TLLVGSCPEVIIGHQSRSPVVDSELAALEKTYNTYRSNTLTRVQFKLALHYFKNHLQCAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH