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Report for CCDS54320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54320.1 Public Homo sapiens 19 RDH13 24 110 108 CCDS HistoryNCBI Gene:112724Re-query CCDS DB by CCDS ID:54320.1Re-query CCDS DB by GeneID:112724See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54320.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415061.8 ENSP00000391121.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000415061.8Link to Ensembl Protein Viewer:ENSP00000391121.2Re-query CCDS DB by Nucleotide ID:ENST00000415061Re-query CCDS DB by Protein ID:ENSP00000391121
Original member Current member NCBI NM_001145971.2 NP_001139443.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145971.2Link to Protein Sequence:NP_001139443.1Re-query CCDS DB by Nucleotide ID:NM_001145971Re-query CCDS DB by Protein ID:NP_001139443Link to BLAST:NP_001139443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139443.1 331 Q8NBN7-1 331 100% 0 0

Chromosomal Locations for CCDS 54320.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55045074 55045309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55047387 55047488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55048329 55048541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55048659 55048763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55056653 55056808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55059157 55059275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55062968 55063032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGAGCCGCTACCTGCTGCCGCTGTCGGCGCTGGGCACGGTAGCAGGCGCCGCCGTGCTGCTCAAGGACT
ATGTCACCGGTGGGGCTTGCCCCAGCAAGGCCACCATCCCTGGGAAGACGGTCATCGTGACGGGTGCCAA
CACAGGCATCGGGAAGCAGACCGCCTTGGAACTGGCCAGGAGAGGAGGCAACATCATCCTGGCCTGCCGA
GACATGGAGAAGTGTGAGGCGGCAGCAAAGGACATCCGCGGGGAGACCCTCAATCACCATGTCAACGCCC
GGCACCTGGACTTGGCTTCCCTCAAGTCTATCCGAGAGTTTGCAGCAAAGATCATTGAAGAGGAGGAGCG
AGTGGACATTCTAATCAACAACGCGGGTGTGATGCGGTGCCCCCACTGGACCACCGAGGACGGCTTCGAG
ATGCAGTTTGGCGTTAACCACCTGGGTCACTTTCTCTTGACAAACTTGCTGCTGGACAAGCTGAAAGCCT
CAGCCCCTTCGCGGATCATCAACCTCTCGTCCCTGGCCCATGTTGCTGGGCACATAGACTTTGACGACTT
GAACTGGCAGACGAGGAAGTATAACACCAAAGCCGCCTACTGCCAGAGCAAGCTCGCCATCGTCCTCTTC
ACCAAGGAGCTGAGCCGGCGGCTGCAAGGCTCTGGTGTGACTGTCAACGCCCTGCACCCCGGCGTGGCCA
GGACAGAGCTGGGCAGACACACGGGCATCCATGGCTCCACCTTCTCCAGCACCACACTCGGGCCCATCTT
CTGGCTGCTGGTCAAGAGCCCCGAGCTGGCCGCCCAGCCCAGCACATACCTGGCCGTGGCGGAGGAACTG
GCGGATGTTTCCGGAAAGTACTTCGATGGACTCAAACAGAAGGCCCCGGCCCCCGAGGCTGAGGATGAGG
AGGTGGCCCGGAGGCTTTGGGCTGAAAGTGCCCGCCTGGTGGGCTTAGAGGCTCCCTCTGTGAGGGAGCA
GCCCCTCCCCAGATAA

Translation (331 aa):
MSRYLLPLSALGTVAGAAVLLKDYVTGGACPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACR
DMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFE
MQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAYCQSKLAIVLF
TKELSRRLQGSGVTVNALHPGVARTELGRHTGIHGSTFSSTTLGPIFWLLVKSPELAAQPSTYLAVAEEL
ADVSGKYFDGLKQKAPAPEAEDEEVARRLWAESARLVGLEAPSVREQPLPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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