NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54972.1 Public Homo sapiens 6 ACOT13 24 110 108 CCDS HistoryNCBI Gene:55856Re-query CCDS DB by CCDS ID:54972.1Re-query CCDS DB by GeneID:55856See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54972.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537591.5 ENSP00000445552.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537591.5Link to Ensembl Protein Viewer:ENSP00000445552.1Re-query CCDS DB by Nucleotide ID:ENST00000537591Re-query CCDS DB by Protein ID:ENSP00000445552
Original member Current member NCBI NM_001160094.2 NP_001153566.1 Accepted alive Link to Nucleotide Sequence:NM_001160094.2Link to Protein Sequence:NP_001153566.1Re-query CCDS DB by Nucleotide ID:NM_001160094Re-query CCDS DB by Protein ID:NP_001153566Link to BLAST:NP_001153566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153566.1 117 Q9NPJ3-2 117 100% 0 0

Chromosomal Locations for CCDS 54972.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24687682 24687693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24697883 24698067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24701459 24701615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGTTAGAAAGATTACTCTTGTCTCTGCTGCTCCTGGGAAAGTGATTTGTGAAATGAAAGTAGAAGAAG
AGCATACCAATGCAATAGGCACTCTCCACGGCGGTTTGACAGCCACGTTAGTAGATAACATATCAACAAT
GGCTCTGCTATGCACGGAAAGGGGAGCACCCGGAGTCAGTGTCGATATGAACATAACGTACATGTCACCT
GCAAAATTAGGAGAAGATATAGTGATTACAGCACATGTTCTGAAGCAAGGAAAAACACTTGCATTTACCT
CTGTGGATCTGACCAACAAGGCCACAGGAAAATTAATAGCACAAGGAAGACACACAAAACACCTGGGAAA
CTGA

Translation (117 aa):
MVRKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSP
AKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH