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Report for CCDS5507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5507.1 Public Homo sapiens 7 UPP1 24 110 108 CCDS HistoryNCBI Gene:7378Re-query CCDS DB by CCDS ID:5507.1Re-query CCDS DB by GeneID:7378See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5507.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331803.8 ENSP00000330032.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000331803.8Link to Ensembl Protein Viewer:ENSP00000330032.4Re-query CCDS DB by Nucleotide ID:ENST00000331803Re-query CCDS DB by Protein ID:ENSP00000330032
Original member Current member EBI ENST00000395564.9 ENSP00000378931.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395564.9Link to Ensembl Protein Viewer:ENSP00000378931.4Re-query CCDS DB by Nucleotide ID:ENST00000395564Re-query CCDS DB by Protein ID:ENSP00000378931
Original member Current member NCBI NM_001287426.2 NP_001274355.1 Accepted alive Link to Nucleotide Sequence:NM_001287426.2Link to Protein Sequence:NP_001274355.1Re-query CCDS DB by Nucleotide ID:NM_001287426Re-query CCDS DB by Protein ID:NP_001274355Link to BLAST:NP_001274355.1
Original member Current member NCBI NM_001362774.2 NP_001349703.1 Accepted alive Link to Nucleotide Sequence:NM_001362774.2Link to Protein Sequence:NP_001349703.1Re-query CCDS DB by Nucleotide ID:NM_001362774Re-query CCDS DB by Protein ID:NP_001349703Link to BLAST:NP_001349703.1
Original member Current member NCBI NM_003364.4 NP_003355.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003364.4Link to Protein Sequence:NP_003355.1Re-query CCDS DB by Nucleotide ID:NM_003364Re-query CCDS DB by Protein ID:NP_003355Link to BLAST:NP_003355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274355.1 310 Q16831-1 310 100% 0 0
NP_001349703.1 310 Q16831-1 310 100% 0 0
NP_003355.1 310 Q16831-1 310 100% 0 0

Chromosomal Locations for CCDS 5507.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 48094784 48094827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48099670 48099787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48101824 48101982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48103297 48103411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48106873 48107082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48107361 48107507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48108218 48108357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCGGCCACGGGAGCCAATGCAGAGAAAGCTGAAAGTCACAATGATTGCCCCGTCAGACTTTTAAATC
CAAACATAGCAAAAATGAAAGAAGATATTCTCTATCATTTCAATCTCACCACTAGCAGACACAATTTCCC
AGCCTTGTTTGGAGATGTGAAGTTTGTGTGTGTTGGTGGAAGCCCCTCCCGGATGAAAGCCTTCATCAGG
TGCGTTGGTGCAGAGCTGGGCCTTGACTGCCCAGGTAGAGACTATCCCAACATCTGTGCGGGAACTGACC
GCTATGCCATGTATAAAGTAGGACCGGTGCTGTCTGTCAGTCATGGTATGGGCATTCCTTCTATCTCAAT
CATGTTGCATGAGCTCATAAAGCTGCTGTACTATGCCCGGTGCTCCAACGTCACTATCATCCGCATTGGC
ACTTCTGGTGGGATAGGTCTGGAGCCCGGCACTGTGGTCATAACAGAGCAGGCAGTGGATACCTGCTTCA
AGGCAGAGTTTGAGCAGATTGTCCTGGGGAAGCGGGTCATCCGGAAAACGGACCTTAACAAGAAGCTGGT
GCAGGAGCTGTTGCTGTGTTCTGCAGAGCTGAGCGAGTTCACCACAGTGGTGGGGAACACCATGTGCACC
TTGGACTTCTATGAAGGGCAAGGCCGTCTGGATGGGGCTCTCTGCTCCTACACGGAGAAGGACAAGCAGG
CGTATCTGGAGGCAGCCTATGCAGCCGGCGTCCGCAATATCGAGATGGAGTCCTCGGTGTTTGCCGCCAT
GTGCAGCGCCTGCGGCCTCCAAGCGGCCGTGGTGTGTGTCACCCTCCTGAACCGCCTGGAAGGGGACCAG
ATCAGCAGCCCTCGCAATGTGCTCAGCGAGTACCAGCAGAGGCCGCAGCGGCTGGTGAGCTACTTCATCA
AGAAGAAACTGAGCAAGGCCTGA

Translation (310 aa):
MAATGANAEKAESHNDCPVRLLNPNIAKMKEDILYHFNLTTSRHNFPALFGDVKFVCVGGSPSRMKAFIR
CVGAELGLDCPGRDYPNICAGTDRYAMYKVGPVLSVSHGMGIPSISIMLHELIKLLYYARCSNVTIIRIG
TSGGIGLEPGTVVITEQAVDTCFKAEFEQIVLGKRVIRKTDLNKKLVQELLLCSAELSEFTTVVGNTMCT
LDFYEGQGRLDGALCSYTEKDKQAYLEAAYAAGVRNIEMESSVFAAMCSACGLQAAVVCVTLLNRLEGDQ
ISSPRNVLSEYQQRPQRLVSYFIKKKLSKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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