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Report for CCDS56433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56433.1 Public Homo sapiens 6 ELOVL5 24 110 108 CCDS HistoryNCBI Gene:60481Re-query CCDS DB by CCDS ID:56433.1Re-query CCDS DB by GeneID:60481See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56433.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370918.8 ENSP00000359956.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370918.8Link to Ensembl Protein Viewer:ENSP00000359956.5Re-query CCDS DB by Nucleotide ID:ENST00000370918Re-query CCDS DB by Protein ID:ENSP00000359956
Original member Current member NCBI NM_001242828.2 NP_001229757.1 Accepted alive Link to Nucleotide Sequence:NM_001242828.2Link to Protein Sequence:NP_001229757.1Re-query CCDS DB by Nucleotide ID:NM_001242828Re-query CCDS DB by Protein ID:NP_001229757Link to BLAST:NP_001229757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229757.1 326 Q9NYP7-2 326 100% 0 0

Chromosomal Locations for CCDS 56433.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 53269127 53269270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53270593 53270727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53273220 53273344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53275090 53275261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53276179 53276256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53287862 53287942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53291776 53291963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53295642 53295699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGAACATTTTGATGCATCACTTAGTACCTATTTCAAGGCATTGCTAGGCCCTCGAGATACTAGAGTAA
AA
GGATGGTTTCTTCTGGACAATTATATACCCACATTTATCTGCTCTGTCATATATTTACTAATTGTATG
G
CTGGGACCAAAATACATGAGGAATAAACAGCCATTCTCTTGCCGGGGGATTTTAGTGGTGTATAACCTT
GGA
CTCACACTGCTGTCTCTGTATATGTTCTGTGAGTCCAAAAGGGAGCAACCCCGTCGATCTGCCTGTG
CC
TCACGAACTGATCCTTCGACTCAGCAGCAGCTGCCAGAAAACAGGTTAGTAACAGGAGTATGGGAAGG
C
AAATACAACTTCTTCTGTCAGGGCACACGCACCGCAGGAGAATCAGATATGAAGATTATCCGTGTCCTC
TGG
TGGTACTACTTCTCCAAACTCATAGAATTTATGGACACTTTCTTCTTCATCCTGCGCAAGAACAACC
AC
CAGATCACGGTCCTGCACGTCTACCACCATGCCTCGATGCTGAACATCTGGTGGTTTGTGATGAACTG
G
GTCCCCTGCGGCCACTCTTATTTTGGTGCCACACTTAATAGCTTCATCCACGTCCTCATGTACTCTTAC
TAT
GGTTTGTCGTCAGTCCCTTCCATGCGTCCATACCTCTGGTGGAAGAAGTACATCACTCAGGGGCAGC
TG
CTTCAGTTTGTGCTGACAATCATCCAGACCAGCTGCGGGGTCATCTGGCCGTGCACATTCCCTCTTGG
T
TGGTTGTATTTCCAGATTGGATACATGATTTCCCTGATTGCTCTCTTCACAAACTTCTACATTCAGACC
TAC
AACAAGAAAGGGGCCTCCCGAAGGAAAGACCACCTGAAGGACCACCAGAATGGGTCCATGGCTGCTG
TG
AATGGACACACCAACAGCTTTTCACCCCTGGAAAACAATGTGAAGCCAAGGAAGCTGCGGAAGGATTG
A


Translation (326 aa):
MEHFDASLSTYFKALLGPRDTRVKGWFLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNL
G
LTLLSLYMFCE
SKREQPRRSACASRTDPSTQQQLPENRLVTGVWEGKYNFFCQGTRTAGESDMKIIRVL
W
WYYFSKLIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGH
SYFGATLNSFIHVLMYSY
Y
GLSSVPSMRPYLWWKKYITQGQL
LQFVLTIIQTSCGVIWPCTFPLGWLYFQIGYMISLIALFTNFYIQT
Y
NKKGASRRKDHLKDHQNGSMAAVNGHTNSFSPLENNVKPRKLRKD




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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