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Report for CCDS56451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56451.1 Public Homo sapiens 6 VNN2 24 110 108 CCDS HistoryNCBI Gene:8875Re-query CCDS DB by CCDS ID:56451.1Re-query CCDS DB by GeneID:8875See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56451.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525289.5 ENSP00000436935.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525289.5Link to Ensembl Protein Viewer:ENSP00000436935.1Re-query CCDS DB by Nucleotide ID:ENST00000525289Re-query CCDS DB by Protein ID:ENSP00000436935
Original member Current member NCBI NM_001242350.3 NP_001229279.2 Accepted alive Link to Nucleotide Sequence:NM_001242350.3Link to Protein Sequence:NP_001229279.2Re-query CCDS DB by Nucleotide ID:NM_001242350Re-query CCDS DB by Protein ID:NP_001229279Link to BLAST:NP_001229279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229279.2 299 O95498-2 299 100% 0 0

Chromosomal Locations for CCDS 56451.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132744300 132744491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132749695 132749865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132755843 132756035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132757416 132757546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132757671 132757883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGTCACTTCCTCTTTTCCAATCTCTGTGGCAGTTTTTGCCCTAATAACCCTGCAGGTTGGTACTCAGG
ACAGTTTTATAGCTGCAGTGTATGAACATGCTGTCATTTTGCCAAATAAAACAGAAACACCAGTTTCTCA
GGAGGATGCCTTGAATCTCATGAACGAGAATATAGACATTCTGGAGACAGCGATCAAGCAGGCAGCTGAG
CAGGGTGCTCGAATCATTGTGACTCCAGAAGATGCACTTTATGGATGGAAATTTACCAGGGAAACTGTTT
TCCCTTATCTGGAGGATATCCCAGACCCTCAGGTGAACTGGATTCCGTGTCAAGACCCCCACAGATTTGG
TCACACACCAGTACAAGCAAGACTCAGCTGCCTGGCCAAGGACAACTCTATCTATGTCTTGGCAAATTTG
GGGGACAAAAAGCCATGTAATTCCCGTGACTCCACATGTCCTCCTAATGGCTACTTTCAATACAATACCA
ATGTGGTGTATAATACAGAAGGAAAACTCGTGGCACGTTACCATAAGGTCTGCACACTGCTGAAGTGCAA
AACTACTAATTTGACAACTTGTGGACGGCCAGTAGAAACTGCTTCTACAAGATTTGAAATGTTCTCCCTC
AGTGGCACATTTGGAACAGAGTATGTTTTTCCTGAAGTGCTACTTACCGAAATTCATCTGTCACCTGGAA
AATTTGAGGTGCTGAAAGATGGGCGTTTGGTAAACAAGAATGGATCATCTGGGCCTATACTAACAGTGTC
ACTCTTTGGGAGGTGGTACACAAAGGACTCACTTTACAGCTCATGTGGGACCAGCAATTCAGCAATAACT
TACCTGCTAATATTCATATTATTAATGATCATAGCTTTGCAAAATATTGTAATGTTATAG

Translation (299 aa):
MVTSSFPISVAVFALITLQVGTQDSFIAAVYEHAVILPNKTETPVSQEDALNLMNENIDILETAIKQAAE
QGARIIVTPEDALYGWKFTRETVFPYLEDIPDPQVNWIPCQDPHRFGHTPVQARLSCLAKDNSIYVLANL
GDKKPCNSRDSTCPPNGYFQYNTNVVYNTEGKLVARYHKVCTLLKCKTTNLTTCGRPVETASTRFEMFSL
SGTFGTEYVFPEVLLTEIHLSPGKFEVLKDGRLVNKNGSSGPILTVSLFGRWYTKDSLYSSCGTSNSAIT
YLLIFILLMIIALQNIVML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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