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Report for CCDS56577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56577.1 Public Homo sapiens 9 GDA 24 110 108 CCDS HistoryNCBI Gene:9615Re-query CCDS DB by CCDS ID:56577.1Re-query CCDS DB by GeneID:9615See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545168.5 ENSP00000437972.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545168.5Link to Ensembl Protein Viewer:ENSP00000437972.1Re-query CCDS DB by Nucleotide ID:ENST00000545168Re-query CCDS DB by Protein ID:ENSP00000437972
Original member Current member NCBI NM_001242506.3 NP_001229435.1 Accepted alive Link to Nucleotide Sequence:NM_001242506.3Link to Protein Sequence:NP_001229435.1Re-query CCDS DB by Nucleotide ID:NM_001242506Re-query CCDS DB by Protein ID:NP_001229435Link to BLAST:NP_001229435.1
Original member Current member NCBI NM_001242507.3 NP_001229436.1 Accepted alive Link to Nucleotide Sequence:NM_001242507.3Link to Protein Sequence:NP_001229436.1Re-query CCDS DB by Nucleotide ID:NM_001242507Re-query CCDS DB by Protein ID:NP_001229436Link to BLAST:NP_001229436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229435.1 380 Q9Y2T3-2 380 100% 0 0
NP_001229436.1 380 Q9Y2T3-2 380 100% 0 0

Chromosomal Locations for CCDS 56577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72202581 72202742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72210687 72210774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72213886 72213991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72219479 72219506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72223120 72223227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72225677 72225784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72227943 72228040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72231114 72231181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72241152 72241298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72245148 72245278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72247406 72247433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72248272 72248342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGCCTGGGCTGGTTGATACACACATCCATGCCTCTCAGTATTCCTTTGCTGGAAGTAGCATAGACCTGC
CACTCTTGGAGTGGCTGACCAAGTACACATTTCCTGCAGAACACAGATTCCAGAACATCGACTTTGCAGA
AGAAGTATATACCAGAGTTGTCAGGAGAACACTAAAGAATGGAACAACCACAGCTTGTTACTTTGCAACA
ATTCACACTGACTCATCTCTGCTCCTTGCCGACATTACAGATAAATTTGGACAGCGGGCATTTGTGGGCA
AAGTTTGCATGGATTTGAATGACACTTTTCCAGAATACAAGGAGACCACTGAGGAATCGATCAAGGAAAC
TGAGAGATTTGTGTCAGAAATGCTCCAAAAGAACTATTCTAGAGTGAAGCCCATAGTGACACCACGTTTT
TCCCTCTCCTGCTCTGAGACTTTGATGGGTGAACTGGGCAACATTGCTAAAACCCGTGATTTGCACATTC
AGAGCCATATAAGTGAAAATCGTGATGAAGTTGAAGCTGTGAAAAACTTATACCCCAGTTATAAAAACTA
CACATCTGTGTATGATAAAAACAATCTTTTGACAAATAAGACAGTGATGGCACACGGCTGCTACCTCTCT
GCAGAAGAACTGAACGTATTCCATGAACGAGGAGCATCCATCGCACACTGTCCCAATTCTAATTTATCGC
TCAGCAGTGGATTTCTAAATGTGCTAGAAGTCCTGAAACATGAAGTCAAGATAGGGCTGGGTACAGACGT
GGCTGGTGGCTATTCATATTCCATGCTTGATGCAATCAGAAGAGCAGTGATGGTTTCCAATATCCTTTTA
ATTAATAAGGTAAATGAGAAAAGCCTCACCCTCAAAGAAGTCTTCAGACTAGCTACTCTTGGAGGAAGCC
AAGCCCTGGGGCTGGATGGTGAGATTGGAAACTTTGAAGTGGGCAAGGAATTTGATGCCATCCTGATCAA
CCCCAAAGCATCCGACTCTCCCATTGACCTGTTTTATGGGGACTTTTTTGGTGATATTTCTGAGGCTGTT
ATCCAGAAGTTCCTCTATCTAGGAGATGATCGAAATATTGAAGAGGTTTATGTGGGCGGAAAGCAGGTGG
TTCCGTTTTCCAGCTCAGTGTAA

Translation (380 aa):
MPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFAT
IHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRF
SLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLS
AEELNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNILL
INKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAV
IQKFLYLGDDRNIEEVYVGGKQVVPFSSSV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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