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Report for CCDS57167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57167.1 Public Mus musculus 2 Ak1 23 108 98 CCDS HistoryNCBI Gene:11636Re-query CCDS DB by CCDS ID:57167.1Re-query CCDS DB by GeneID:11636See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57167.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113277.7 ENSMUSP00000108902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113277.7Link to Ensembl Protein Viewer:ENSMUSP00000108902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113277Re-query CCDS DB by Protein ID:ENSMUSP00000108902
Original member Current member EBI ENSMUST00000113278.8 ENSMUSP00000108903.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113278.8Link to Ensembl Protein Viewer:ENSMUSP00000108903.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113278Re-query CCDS DB by Protein ID:ENSMUSP00000108903
Original member Current member NCBI NM_001198790.1 NP_001185719.1 Accepted alive Link to Nucleotide Sequence:NM_001198790.1Link to Protein Sequence:NP_001185719.1Re-query CCDS DB by Nucleotide ID:NM_001198790Re-query CCDS DB by Protein ID:NP_001185719Link to BLAST:NP_001185719.1
Original member Current member NCBI NM_001198791.1 NP_001185720.1 Accepted alive Link to Nucleotide Sequence:NM_001198791.1Link to Protein Sequence:NP_001185720.1Re-query CCDS DB by Nucleotide ID:NM_001198791Re-query CCDS DB by Protein ID:NP_001185720Link to BLAST:NP_001185720.1
Original member Current member NCBI NM_001198792.1 NP_001185721.1 Accepted alive Link to Nucleotide Sequence:NM_001198792.1Link to Protein Sequence:NP_001185721.1Re-query CCDS DB by Nucleotide ID:NM_001198792Re-query CCDS DB by Protein ID:NP_001185721Link to BLAST:NP_001185721.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185719.1 194 Q9R0Y5-1 194 100% 0 0
NP_001185720.1 194 Q9R0Y5-1 194 100% 0 0
NP_001185721.1 194 Q9R0Y5-1 194 100% 0 0

Chromosomal Locations for CCDS 57167.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32628482 32628488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32629849 32629884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32630235 32630398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32631076 32631192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32633294 32633485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32633641 32633709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGAAGAGAAGCTGAAGAAGGCCAAGATCATCTTTGTGGTGGGCGGACCTGGCTCAGGAAAGGGCACCC
AGTGCGAGAAGATTGTACAGAAATATGGCTACACCCACCTGTCTACTGGGGACCTGCTTCGGGCAGAAGT
CAGCTCTGGATCGGAGAGGGGCAAGAAGCTGTCGGCTATCATGGAGAAGGGAGAGCTAGTGCCACTGGAC
ACGGTGCTGGACATGCTCCGAGATGCTATGTTAGCCAAAGTGGATTCTTCCAATGGCTTCCTGATCGACG
GCTACCCGAGGGAGGTGAAACAGGGAGAAGAATTTGAACAGAAGATTGGACAGCCCACACTGCTGCTGTA
TGTGGACGCAGGCGCCGAGACCATGACCCAACGACTCCTGAAGCGAGGGGAGACCAGTGGCCGCGTGGAT
GACAACGAGGAGACCATCAAGAAGCGGCTGGAGACTTATTACAATGCCACAGAACCTGTCATCTCCTTCT
ATGACAAGCGTGGCATTGTGCGCAAGGTCAATGCCGAAGGCACGGTGGACACTGTCTTCTCTGAGGTCTG
CACCTATCTTGACTCCCTGAAGTAA

Translation (194 aa):
MEEKLKKAKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSERGKKLSAIMEKGELVPLD
TVLDMLRDAMLAKVDSSNGFLIDGYPREVKQGEEFEQKIGQPTLLLYVDAGAETMTQRLLKRGETSGRVD
DNEETIKKRLETYYNATEPVISFYDKRGIVRKVNAEGTVDTVFSEVCTYLDSLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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