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Report for CCDS57298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57298.1 Public Mus musculus 4 Tmem54 23 108 98 CCDS HistoryNCBI Gene:66260Re-query CCDS DB by CCDS ID:57298.1Re-query CCDS DB by GeneID:66260See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57298.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030575.14 ENSMUSP00000030575.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030575.14Link to Ensembl Protein Viewer:ENSMUSP00000030575.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030575Re-query CCDS DB by Protein ID:ENSMUSP00000030575
Original member Current member NCBI NM_133881.1 NP_598642.1 Accepted alive Link to Nucleotide Sequence:NM_133881.1Link to Protein Sequence:NP_598642.1Re-query CCDS DB by Nucleotide ID:NM_133881Re-query CCDS DB by Protein ID:NP_598642Link to BLAST:NP_598642.1

Chromosomal Locations for CCDS 57298.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129105716 129105731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129108211 129108404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129110530 129110718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129110813 129110947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129111239 129111262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGTGTCTGCGCATAGGTAGCCTGAATGTGGATGAGTTCCGGAAGGTGCTGATGAAGACGGGTCTGGTGC
TGGTTGTGCTGGGTCACGTGAGCTTCATTGCAGCCGCCGTGCTCCATGGTACCATGCTTCGCTTCGTAGC
CACCACCAGTGACGCTGTGGTTCTACAGTACTGCGCAGTGGACATCCTCTCTGTCACCTCTGCCATTGTG
CGCTGGACCGTGTTTAGCTTGAGTGTGGCCTGTGCTCTTCTCTCTCTGACCTGTGCCCTTGGACTCCTGG
CCTCCATTGCAGTGACCTTCGCCACCAAGGGTAGAGCACTATTGGCGGCCTGTACTTTTGAGAACCCTGA
ACTCCCAACACTGGCACCTGACTGTCCTTTTGACCCTACTCGAATTTATAGCTCTAGCCTGTGCCTCTGG
GCCATCTCTCTCATATTCTGTCTGGCGGAGAGTATGTCTGCCGTGCGCTGCGCCCAGCTCATGCATGGAC
TACTGGAACTAAGGCCCTGGTGGGGGAAGAGCTGCCACCACACGAAGCCCTTCCTTCTTCCAATTTGA

Translation (185 aa):
MCLRIGSLNVDEFRKVLMKTGLVLVVLGHVSFIAAAVLHGTMLRFVATTSDAVVLQYCAVDILSVTSAIV
RWTVFSLSVACALLSLTCALGLLASIAVTFATKGRALLAACTFENPELPTLAPDCPFDPTRIYSSSLCLW
AISLIFCLAESMSAVRCAQLMHGLLELRPWWGKSCHHTKPFLLPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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