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Report for CCDS57993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57993.1 Public Homo sapiens 1 ST3GAL3 24 110 108 CCDS HistoryNCBI Gene:6487Re-query CCDS DB by CCDS ID:57993.1Re-query CCDS DB by GeneID:6487See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57993.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372367.5 ENSP00000361442.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372367.5Link to Ensembl Protein Viewer:ENSP00000361442.1Re-query CCDS DB by Nucleotide ID:ENST00000372367Re-query CCDS DB by Protein ID:ENSP00000361442
Original member Current member NCBI NM_001270463.3 NP_001257392.1 Accepted alive Link to Nucleotide Sequence:NM_001270463.3Link to Protein Sequence:NP_001257392.1Re-query CCDS DB by Nucleotide ID:NM_001270463Re-query CCDS DB by Protein ID:NP_001257392Link to BLAST:NP_001257392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257392.1 201 Q11203-24 201 100% 0 0

Chromosomal Locations for CCDS 57993.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43736263 43736425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43814891 43814933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43838219 43838311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43894383 43894477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43898235 43898298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43899168 43899263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43930132 43930183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGGACTCTTGGTATTTGTGCGCAATCTGCTGCTAGCCCTCTGCCTCTTTCTGGTACTGGGATTTTTGT
ATTATTCTGCGTGGAAGCTACACTTACTCCAGTGGGAGGAGGACTCCAGTAAGTATAGTCACTCTAGCTC
ACCCCAGGAGAAGCCTGTTGCAGAGTATGATCGGTTGGGCTTCCTCCTGAATCTGGACTCTAAACTGCCT
GCTGAATTAGCCACCAAGTACGCAAACTTTTCAGAGGGAGCTTGCAAGCCTGGCTATGCTTCAGCCTTGA
TGACGGCCATCTTCCCCCGGTTCTCCAAGCCAGCACCCATGTTCCTGGATGACTCCTTTCGCAAGTGGGC
TAGAATCCGGGAGTTCGTGCCGCCTTTTGGGATCAAAGGTCAAGACAATCTGATCAAAGCCATCTTGTCA
GTCACCAAAGAGTACCGCCTGACCCCTGCCTTGGACAGCCTCCGCTGCCGCCGCTGCATCATCGTGGGCA
ATGGAGGCGTTCTTGCCAACAAGTCTCTGGGGTCACGAATTGACGACTATGACATTGTGGTGAGTCCTGG
ACGCACAATATCCAGCGAGAGAAAGAGTTTCTGCGGAAGCTGGTGA

Translation (201 aa):
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVAEYDRLGFLLNLDSKLP
AELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQDNLIKAILS
VTKEYRLTPALDSLRCRRCIIVGNGGVLANKSLGSRIDDYDIVVSPGRTISSERKSFCGSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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