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Report for CCDS58017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58017.1 Public Homo sapiens 1 CHIA 24 110 108 CCDS HistoryNCBI Gene:27159Re-query CCDS DB by CCDS ID:58017.1Re-query CCDS DB by GeneID:27159See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353665.10 ENSP00000338970.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000353665.10Link to Ensembl Protein Viewer:ENSP00000338970.7Re-query CCDS DB by Nucleotide ID:ENST00000353665Re-query CCDS DB by Protein ID:ENSP00000338970
Original member Current member EBI ENST00000451398.6 ENSP00000390476.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451398.6Link to Ensembl Protein Viewer:ENSP00000390476.2Re-query CCDS DB by Nucleotide ID:ENST00000451398Re-query CCDS DB by Protein ID:ENSP00000390476
Original member Current member EBI ENST00000483391.5 ENSP00000436946.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000483391.5Link to Ensembl Protein Viewer:ENSP00000436946.1Re-query CCDS DB by Nucleotide ID:ENST00000483391Re-query CCDS DB by Protein ID:ENSP00000436946
Original member Current member NCBI NM_001040623.3 NP_001035713.1 Accepted alive Link to Nucleotide Sequence:NM_001040623.3Link to Protein Sequence:NP_001035713.1Re-query CCDS DB by Nucleotide ID:NM_001040623Re-query CCDS DB by Protein ID:NP_001035713Link to BLAST:NP_001035713.1
Original member Current member NCBI NM_001258002.2 NP_001244931.1 Accepted alive Link to Nucleotide Sequence:NM_001258002.2Link to Protein Sequence:NP_001244931.1Re-query CCDS DB by Nucleotide ID:NM_001258002Re-query CCDS DB by Protein ID:NP_001244931Link to BLAST:NP_001244931.1
Original member Current member NCBI NM_001258004.2 NP_001244933.1 Accepted alive Link to Nucleotide Sequence:NM_001258004.2Link to Protein Sequence:NP_001244933.1Re-query CCDS DB by Nucleotide ID:NM_001258004Re-query CCDS DB by Protein ID:NP_001244933Link to BLAST:NP_001244933.1
Original member Current member NCBI NM_001258005.2 NP_001244934.1 Accepted alive Link to Nucleotide Sequence:NM_001258005.2Link to Protein Sequence:NP_001244934.1Re-query CCDS DB by Nucleotide ID:NM_001258005Re-query CCDS DB by Protein ID:NP_001244934Link to BLAST:NP_001244934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035713.1 315 Q9BZP6-3 315 100% 0 0
NP_001244931.1 315 Q9BZP6-3 315 100% 0 0
NP_001244933.1 315 Q9BZP6-3 315 100% 0 0
NP_001244934.1 315 Q9BZP6-3 315 100% 0 0

Chromosomal Locations for CCDS 58017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 111317684 111317805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111317986 111318109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111318493 111318678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111319120 111319239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111319327 111319468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111320213 111320466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCGTGAAGCTTTTGAGCAGGAGGCCAAGCAGATCAACAAGCCCAGGCTGATGGTCACTGCTGCAGTAG
CTGCTGGCATCTCCAATATCCAGTCTGGCTATGAGATCCCCCAACTGTCACAGTACCTGGACTACATCCA
TGTCATGACCTACGACCTCCATGGCTCCTGGGAGGGCTACACTGGAGAGAACAGCCCCCTCTACAAATAC
CCGACTGACACCGGCAGCAACGCCTACCTCAATGTGGATTATGTCATGAACTACTGGAAGGACAATGGAG
CACCAGCTGAGAAGCTCATCGTTGGATTCCCTACCTATGGACACAACTTCATCCTGAGCAACCCCTCCAA
CACTGGAATTGGTGCCCCCACCTCTGGTGCTGGTCCTGCTGGGCCCTATGCCAAGGAGTCTGGGATCTGG
GCTTACTACGAGATCTGTACCTTCCTGAAAAATGGAGCCACTCAGGGATGGGATGCCCCTCAGGAAGTGC
CTTATGCCTATCAGGGCAATGTGTGGGTTGGCTATGACAACATCAAGAGCTTCGATATTAAGGCTCAATG
GCTTAAGCACAACAAATTTGGAGGCGCCATGGTCTGGGCCATTGATCTGGATGACTTCACTGGCACTTTC
TGCAACCAGGGCAAGTTTCCCCTAATCTCCACCCTGAAGAAGGCCCTCGGCCTGCAGAGTGCAAGTTGCA
CGGCTCCAGCTCAGCCCATTGAGCCAATAACTGCTGCTCCCAGTGGCAGCGGGAACGGGAGCGGGAGTAG
CAGCTCTGGAGGCAGCTCGGGAGGCAGTGGATTCTGTGCTGTCAGAGCCAACGGCCTCTACCCCGTGGCA
AATAACAGAAATGCCTTCTGGCACTGCGTGAATGGAGTCACGTACCAGCAGAACTGCCAGGCCGGGCTTG
TCTTCGACACCAGCTGTGATTGCTGCAACTGGGCATAA

Translation (315 aa):
MREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKY
PTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIW
AYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTF
CNQGKFPLISTLKKALGLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVA
NNRNAFWHCVNGVTYQQNCQAGLVFDTSCDCCNWA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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