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Report for CCDS58125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58125.1 Public Homo sapiens 11 UEVLD 24 110 108 CCDS HistoryNCBI Gene:55293Re-query CCDS DB by CCDS ID:58125.1Re-query CCDS DB by GeneID:55293See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541984.5 ENSP00000437538.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541984.5Link to Ensembl Protein Viewer:ENSP00000437538.1Re-query CCDS DB by Nucleotide ID:ENST00000541984Re-query CCDS DB by Protein ID:ENSP00000437538
Original member Current member NCBI NM_001261386.3 NP_001248315.1 Accepted alive Link to Nucleotide Sequence:NM_001261386.3Link to Protein Sequence:NP_001248315.1Re-query CCDS DB by Nucleotide ID:NM_001261386Re-query CCDS DB by Protein ID:NP_001248315Link to BLAST:NP_001248315.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001248315.1 199 Q8IX04-7 199 100% 0 0

Chromosomal Locations for CCDS 58125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18532477 18532487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18544623 18544796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18558228 18558330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18564892 18565010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18575347 18575412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18578724 18578808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18588613 18588654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGAGTTCGACTGCGAGGGCCTGAGACGGCTGCTTGGCAAGTACAAGTTCAGGGACCTAACTGTGGAAG
AACTAAGGAATGTAAATGTATTTTTCCCACATTTCAAATATTCCATGGACACCTATGTTTTTAAAGATAG
TTCTCAGAAAGACCTGCTGAATTTTACTGGCACAATTCCTGTGATGTATCAGGGTGTTTCAGATACAAAT
TCAAAGAGCTGGGCAAATCATGAGAATAAAACAGTCAATAAAATTACTGTGGTTGGAGGTGGAGAACTCG
GTATTGCCTGCACATTAGCAATTTCAGCAAAGGGTATTGCAGACAGGCTTGTCCTCTTAGACCTCTCAGA
AGGGACTAAAGGAGCCACGATGGACCTTGAAATCTTCAACCTTCCTAATGTGGAGATCAGCAAAGTGGAA
ATCATGACCTATGTAACATGGAAACTGAGTACATTTCCTGCAAATCGAGTGATCGGAATTGGATGTAATC
TGGATTCACAGAGATTACAGTATATTATTACAAATGTTTTGAAGGCACAGACTTCAGGCAAAGAAGTATG
GGTTATTGGCGAGCAAGGAGAAGACAAAGGGATATTATGA

Translation (199 aa):
MEFDCEGLRRLLGKYKFRDLTVEELRNVNVFFPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGVSDTN
SKSWANHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKVE
IMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKGIL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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