NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58193.1 Public Homo sapiens 11 ST3GAL4 24 110 108 CCDS HistoryNCBI Gene:6484Re-query CCDS DB by CCDS ID:58193.1Re-query CCDS DB by GeneID:6484See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58193.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392669.6 ENSP00000376437.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392669.6Link to Ensembl Protein Viewer:ENSP00000376437.2Re-query CCDS DB by Nucleotide ID:ENST00000392669Re-query CCDS DB by Protein ID:ENSP00000376437
Original member Current member EBI ENST00000444328.7 ENSP00000394354.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444328.7Link to Ensembl Protein Viewer:ENSP00000394354.2Re-query CCDS DB by Nucleotide ID:ENST00000444328Re-query CCDS DB by Protein ID:ENSP00000394354
Original member Current member EBI ENST00000534083.5 ENSP00000433318.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534083.5Link to Ensembl Protein Viewer:ENSP00000433318.1Re-query CCDS DB by Nucleotide ID:ENST00000534083Re-query CCDS DB by Protein ID:ENSP00000433318
Original member Current member EBI ENST00000526727.5 ENSP00000436047.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526727.5Link to Ensembl Protein Viewer:ENSP00000436047.1Re-query CCDS DB by Nucleotide ID:ENST00000526727Re-query CCDS DB by Protein ID:ENSP00000436047
Original member Current member NCBI NM_001254757.2 NP_001241686.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001254757.2Link to Protein Sequence:NP_001241686.1Re-query CCDS DB by Nucleotide ID:NM_001254757Re-query CCDS DB by Protein ID:NP_001241686Link to BLAST:NP_001241686.1
Original member Current member NCBI NM_001254758.2 NP_001241687.1 Accepted alive Link to Nucleotide Sequence:NM_001254758.2Link to Protein Sequence:NP_001241687.1Re-query CCDS DB by Nucleotide ID:NM_001254758Re-query CCDS DB by Protein ID:NP_001241687Link to BLAST:NP_001241687.1
Original member Current member NCBI NM_001348399.2 NP_001335328.1 Accepted alive Link to Nucleotide Sequence:NM_001348399.2Link to Protein Sequence:NP_001335328.1Re-query CCDS DB by Nucleotide ID:NM_001348399Re-query CCDS DB by Protein ID:NP_001335328Link to BLAST:NP_001335328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001241686.1 333 Q11206-1 333 100% 0 0
NP_001241687.1 333 Q11206-1 333 100% 0 0
NP_001335328.1 333 Q11206-1 333 100% 0 0

Chromosomal Locations for CCDS 58193.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 126406156 126406171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126406473 126406557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126406943 126407023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126407252 126407349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126407574 126407634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126408099 126408194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126408307 126408496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126409268 126409411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126413505 126413648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126413961 126414047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGTCAGCAAGTCCCGCTGGAAGCTCCTGGCCATGTTGGCTCTGGTCCTGGTCGTCATGGTGTGGTATT
CCATCTCCCGGGAAGACAGGTACATCGAGCTTTTTTATTTTCCCATCCCAGAGAAGAAGGAGCCGTGCCT
CCAGGGTGAGGCAGAGAGCAAGGCCTCTAAGCTCTTTGGCAACTACTCCCGGGATCAGCCCATCTTCCTG
CGGCTTGAGGATTATTTCTGGGTCAAGACGCCATCTGCTTACGAGCTGCCCTATGGGACCAAGGGGAGTG
AGGATCTGCTCCTCCGGGTGCTAGCCATCACCAGCTCCTCCATCCCCAAGAACATCCAGAGCCTCAGGTG
CCGCCGCTGTGTGGTCGTGGGGAACGGGCACCGGCTGCGGAACAGCTCACTGGGAGATGCCATCAACAAG
TACGATGTGGTCATCAGATTGAACAATGCCCCAGTGGCTGGCTATGAGGGTGACGTGGGCTCCAAGACCA
CCATGCGTCTCTTCTACCCTGAATCTGCCCACTTCGACCCCAAAGTAGAAAACAACCCAGACACACTCCT
CGTCCTGGTAGCTTTCAAGGCAATGGACTTCCACTGGATTGAGACCATCCTGAGTGATAAGAAGCGGGTG
CGAAAGGGTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCTAAACAGATTCGGATTCTCAACC
CCTTCTTCATGGAGATTGCAGCTGACAAACTGCTGAGCCTGCCAATGCAACAGCCACGGAAGATTAAGCA
GAAGCCCACCACGGGCCTGTTGGCCATCACGCTGGCCCTCCACCTCTGTGACTTGGTGCACATTGCCGGC
TTTGGCTACCCAGACGCCTACAACAAGAAGCAGACCATTCACTACTATGAGCAGATCACGCTCAAGTCCA
TGGCGGGGTCAGGCCATAATGTCTCCCAAGAGGCCCTGGCCATTAAGCGGATGCTGGAGATGGGAGCTAT
CAAGAACCTCACGTCCTTCTGA

Translation (333 aa):
MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFGNYSRDQPIFL
RLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRCVVVGNGHRLRNSSLGDAINK
YDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVENNPDTLLVLVAFKAMDFHWIETILSDKKRV
RKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAG
FGYPDAYNKKQTIHYYEQITLKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH