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Report for CCDS5833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5833.1 Public Homo sapiens 7 BPGM 24 110 108 CCDS HistoryNCBI Gene:669Re-query CCDS DB by CCDS ID:5833.1Re-query CCDS DB by GeneID:669See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344924.8 ENSP00000342032.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344924.8Link to Ensembl Protein Viewer:ENSP00000342032.3Re-query CCDS DB by Nucleotide ID:ENST00000344924Re-query CCDS DB by Protein ID:ENSP00000342032
Original member Current member EBI ENST00000393132.2 ENSP00000376840.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393132.2Link to Ensembl Protein Viewer:ENSP00000376840.2Re-query CCDS DB by Nucleotide ID:ENST00000393132Re-query CCDS DB by Protein ID:ENSP00000376840
Original member Current member EBI ENST00000418040.5 ENSP00000399838.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418040.5Link to Ensembl Protein Viewer:ENSP00000399838.1Re-query CCDS DB by Nucleotide ID:ENST00000418040Re-query CCDS DB by Protein ID:ENSP00000399838
Original member Current member NCBI NM_001293085.2 NP_001280014.1 Accepted alive Link to Nucleotide Sequence:NM_001293085.2Link to Protein Sequence:NP_001280014.1Re-query CCDS DB by Nucleotide ID:NM_001293085Re-query CCDS DB by Protein ID:NP_001280014Link to BLAST:NP_001280014.1
Original member Current member NCBI NM_001724.5 NP_001715.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001724.5Link to Protein Sequence:NP_001715.1Re-query CCDS DB by Nucleotide ID:NM_001724Re-query CCDS DB by Protein ID:NP_001715Link to BLAST:NP_001715.1
Original member Current member NCBI NM_199186.3 NP_954655.1 Accepted alive Link to Nucleotide Sequence:NM_199186.3Link to Protein Sequence:NP_954655.1Re-query CCDS DB by Nucleotide ID:NM_199186Re-query CCDS DB by Protein ID:NP_954655Link to BLAST:NP_954655.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280014.1 259 P07738 259 100% 0 0
NP_001715.1 259 P07738 259 100% 0 0
NP_954655.1 259 P07738 259 100% 0 0

Chromosomal Locations for CCDS 5833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 134661508 134662108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134678853 134679031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGTCCAAGTACAAACTTATTATGTTAAGACATGGAGAGGGTGCTTGGAATAAGGAGAACCGTTTTTGTA
GCTGGGTGGATCAGAAACTCAACAGCGAAGGAATGGAGGAAGCTCGGAACTGTGGGAAGCAACTCAAAGC
GTTAAACTTTGAGTTTGATCTTGTATTCACATCTGTCCTTAATCGGTCCATTCACACAGCCTGGCTGATC
CTGGAAGAGCTAGGCCAGGAATGGGTGCCTGTGGAAAGCTCCTGGCGTCTAAATGAGCGTCACTATGGGG
CCTTGATCGGTCTCAACAGGGAGCAGATGGCTTTGAATCATGGTGAAGAACAAGTGAGGCTCTGGAGAAG
AAGCTACAATGTAACCCCGCCTCCCATTGAGGAGTCTCATCCTTACTACCAAGAAATCTACAACGACCGG
AGGTATAAAGTATGCGATGTGCCCTTGGATCAACTGCCACGGTCGGAAAGCTTAAAGGATGTTCTGGAGA
GACTCCTTCCCTATTGGAATGAAAGGATTGCTCCCGAAGTATTACGTGGCAAAACCATTCTGATATCTGC
TCATGGAAATAGCAGTAGGGCACTCCTAAAACACCTGGAAGGTATCTCAGATGAAGACATCATCAACATT
ACTCTTCCTACTGGAGTCCCCATTCTTCTGGAATTGGATGAAAACCTGCGTGCTGTTGGGCCTCATCAGT
TCCTGGGTGACCAAGAGGCGATCCAAGCAGCCATTAAGAAAGTAGAAGATCAAGGAAAAGTGAAACAAGC
TAAAAAATAG

Translation (259 aa):
MSKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSIHTAWLI
LEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDR
RYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINI
TLPTGVPILLELDENLRAVGPHQFLGDQEAIQAAIKKVEDQGKVKQAKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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