NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5840.1 Public Homo sapiens 7 SLC13A4 24 110 108 CCDS HistoryNCBI Gene:26266Re-query CCDS DB by CCDS ID:5840.1Re-query CCDS DB by GeneID:26266See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5840.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354042.8 ENSP00000297282.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354042.8Link to Ensembl Protein Viewer:ENSP00000297282.5Re-query CCDS DB by Nucleotide ID:ENST00000354042Re-query CCDS DB by Protein ID:ENSP00000297282
Original member Current member NCBI NM_012450.4 NP_036582.2 Accepted alive Link to Nucleotide Sequence:NM_012450.4Link to Protein Sequence:NP_036582.2Re-query CCDS DB by Nucleotide ID:NM_012450Re-query CCDS DB by Protein ID:NP_036582Link to BLAST:NP_036582.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036582.2 626 Q9UKG4 626 100% 0 0

Chromosomal Locations for CCDS 5840.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135681563 135681700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135684124 135684261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135685522 135685683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135691201 135691325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135691548 135691645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135692323 135692424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135694137 135694238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135695368 135695487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135699364 135699548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135701680 135701760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135702845 135702881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135705596 135705650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135706128 135706300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135708114 135708250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135721395 135721523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135727398 135727496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGGGCCTGCTGCAGGGCCTGCTCCGAGTCCGGAAGCTGCTGCTGGTCGTCTGCGTCCCGCTCCTGCTGC
TGCCTCTGCCCGTCCTCCACCCCAGCAGCGAGGCCTCGTGTGCTTACGTGCTGATCGTGACTGCTGTGTA
CTGGGTGTCGGAGGCAGTGCCTCTGGGAGCTGCAGCCCTGGTGCCGGCCTTCCTTTACCCGTTCTTCGGA
GTCCTCCGGTCCAATGAGGTGGCGGCGGAGTACTTCAAGAACACCACGCTGCTGCTGGTGGGGGTCATCT
GCGTGGCGGCTGCCGTGGAGAAGTGGAACCTGCATAAGCGCATTGCTCTGCGCATGGTCTTGATGGCCGG
AGCCAAGCCGGGCATGCTGCTGCTCTGCTTCATGTGCTGTACCACGTTGCTGTCCATGTGGCTGTCCAAC
ACCTCCACCACCGCCATGGTGATGCCCATCGTGGAGGCCGTGCTGCAGGAGCTGGTCAGTGCTGAGGACG
AGCAGCTCGTGGCGGGCAACTCCAACACCGAAGAGGCCGAACCCATCAGTCTGGATGTAAAGAACAGCCA
ACCTTCTCTGGAACTCATCTTTGTCAATGAAGAGTCCAACGCAGACCTCACCACTCTGATGCACAACGAG
AACCTGAATGGTGTGCCCTCGATCACCAACCCCATCAAAACTGCAAACCAACACCAGGGCAAGAAGCAAC
ACCCATCCCAGGAAAAGCCACAAGTCCTGACCCCCAGCCCCAGGAAGCAGAAGCTGAACAGAAAGTACAG
GTCCCACCATGACCAGATGATCTGCAAGTGCCTCTCCCTGAGCATATCCTACTCCGCTACCATTGGCGGC
CTGACCACCATCATCGGCACCTCCACCAGCCTCATCTTCCTGGAACACTTCAACAACCAGTATCCAGCCG
CAGAGGTGGTGAACTTTGGCACCTGGTTCCTCTTCAGCTTCCCCATATCCCTCATCATGCTGGTGGTCAG
CTGGTTCTGGATGCACTGGCTGTTCCTGGGCTGCAATTTTAAAGAGACCTGCTCTCTGAGCAAGAAGAAG
AAGACCAAAAGGGAACAGTTGTCAGAGAAGAGGATCCAAGAAGAATATGAAAAACTGGGAGACATTAGCT
ACCCAGAAATGGTGACTGGATTTTTCTTCATCCTGATGACCGTACTGTGGTTTACCCGGGAGCCTGGCTT
TGTCCCTGGCTGGGATTCTTTCTTTGAAAAGAAAGGCTACCGTACTGATGCCACAGTCTCTGTCTTCCTT
GGCTTCCTCCTCTTCCTCATTCCAGCGAAGAAGCCCTGCTTTGGGAAAAAGAATGATGGAGAGAACCAGG
AGCACTCACTGGGGACCGAGCCCATCATCACGTGGAAGGACTTCCAGAAGACCATGCCCTGGGAGATTGT
CATTCTGGTTGGGGGAGGCTATGCTCTGGCTTCTGGTAGCAAGAGCTCTGGCCTCTCTACATGGATTGGG
AACCAGATGTTGTCCCTGAGCAGCCTCCCACCGTGGGCTGTCACCCTGCTGGCATGCATCCTCGTGTCCA
TTGTCACTGAGTTTGTGAGCAACCCAGCAACCATCACCATCTTCCTGCCCATCCTGTGCAGCCTGTCTGA
AACGCTGCACATTAACCCCCTCTACACCCTGATCCCAGTCACCATGTGCATCTCCTTTGCAGTGATGCTG
CCTGTGGGCAATCCCCCTAATGCCATCGTCTTCAGCTATGGGCACTGCCAGATCAAAGATATGGTGAAAG
CTGGCCTGGGAGTCAACGTTATTGGACTGGTGATAGTAATGGTGGCCATCAACACCTGGGGAGTTAGCCT
CTTCCACCTGGACACTTACCCAGCATGGGCGAGGGTCAGCAACATCACTGATCAAGCCTAA

Translation (626 aa):
MGLLQGLLRVRKLLLVVCVPLLLLPLPVLHPSSEASCAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFG
VLRSNEVAAEYFKNTTLLLVGVICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTLLSMWLSN
TSTTAMVMPIVEAVLQELVSAEDEQLVAGNSNTEEAEPISLDVKNSQPSLELIFVNEESNADLTTLMHNE
NLNGVPSITNPIKTANQHQGKKQHPSQEKPQVLTPSPRKQKLNRKYRSHHDQMICKCLSLSISYSATIGG
LTTIIGTSTSLIFLEHFNNQYPAAEVVNFGTWFLFSFPISLIMLVVSWFWMHWLFLGCNFKETCSLSKKK
KTKREQLSEKRIQEEYEKLGDISYPEMVTGFFFILMTVLWFTREPGFVPGWDSFFEKKGYRTDATVSVFL
GFLLFLIPAKKPCFGKKNDGENQEHSLGTEPIITWKDFQKTMPWEIVILVGGGYALASGSKSSGLSTWIG
NQMLSLSSLPPWAVTLLACILVSIVTEFVSNPATITIFLPILCSLSETLHINPLYTLIPVTMCISFAVML
PVGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSLFHLDTYPAWARVSNITDQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH