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Report for CCDS58774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58774.1 Public Homo sapiens 20 SLC9A8 24 110 108 CCDS HistoryNCBI Gene:23315Re-query CCDS DB by CCDS ID:58774.1Re-query CCDS DB by GeneID:23315See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58774.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417961.5 ENSP00000416418.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417961.5Link to Ensembl Protein Viewer:ENSP00000416418.1Re-query CCDS DB by Nucleotide ID:ENST00000417961Re-query CCDS DB by Protein ID:ENSP00000416418
Original member Current member NCBI NM_001260491.2 NP_001247420.1 Accepted alive Link to Nucleotide Sequence:NM_001260491.2Link to Protein Sequence:NP_001247420.1Re-query CCDS DB by Nucleotide ID:NM_001260491Re-query CCDS DB by Protein ID:NP_001247420Link to BLAST:NP_001247420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001247420.1 597 Q9Y2E8-2 597 100% 0 0

Chromosomal Locations for CCDS 58774.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 49812923 49812948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49815008 49815189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49823061 49823141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49839541 49839599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49845036 49845119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49849579 49849680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49850762 49850844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49855438 49855581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49862929 49863067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49864739 49864844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49874705 49874821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49877981 49878063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49880924 49881035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49883846 49884066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49886752 49886898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49887829 49887936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGGGGAGAAGATGGCGGAAGAGGAGAGGTTCCCCAATACAACTCATGAGGGTTTCAATGTCACCCTCC
ACACCACCCTGGTTGTCACGACGAAACTGGTGCTCCCGACCCCTGGCAAGCCCATCCTCCCCGTGCAGAC
AGGGGAGCAGGCCCAGCAAGAGGAGCAGTCCAGCGGCATGACCATTTTCTTCAGCCTCCTTGTCCTAGCT
ATCTGCATCATATTGGTGCATTTACTGATCCGATACAGATTACATTTCTTGCCAGAGAGTGTTGCTGTTG
TTTCTTTAGGTATTCTCATGGGAGCAGTTATAAAAATTATAGAGTTTAAAAAACTGGCGAATTGGAAGGA
AGAAGAAATGTTTCGTCCAAACATGTTTTTCCTCCTCCTGCTTCCCCCTATTATCTTTGAGTCTGGATAT
TCATTACACAAGGGTAACTTCTTTCAAAATATTGGTTCCATCACCCTGTTTGCTGTTTTTGGGACGGCAA
TCTCCGCTTTTGTAGTAGGTGGAGGAATTTATTTTCTGGGTCAGGGTTTTTTTTTTGTGTGTGTCTGTGT
GTTTGTGTGTTTTATTTTACAGGCTGATGTAATCTCTAAACTCAACATGACAGACAGTTTTGCGTTTGGC
TCCCTAATATCTGCTGTCGATCCAGTGGCCACTATTGCCATTTTCAATGCACTTCATGTGGACCCCGTGC
TCAACATGCTGGTCTTTGGAGAAAGTATTCTCAACGATGCAGTCTCCATTGTTCTGACCAACACAGCTGA
AGGTTTAACAAGAAAAAATATGTCAGATGTCAGTGGGTGGCAAACATTTTTACAAGCCCTTGACTACTTC
CTCAAAATGTTCTTTGGCTCTGCAGCGCTCGGCACTCTCACTGGCTTAATTTCTGCATTAGTGCTGAAGC
ATATTGACTTGAGGAAAACGCCTTCCTTGGAGTTTGGCATGATGATCATTTTTGCTTATCTGCCTTATGG
GCTTGCAGAAGGAATCTCACTCTCAGGCATCATGGCCATCCTTTTCTCAGGCATCGTGATGTCCCACTAC
ACGCACCATAACCTCTCCCCAGTCACCCAGATCCTCATGCAGCAGACCCTCCGCACCGTGGCCTTCTTAT
GTGAAACATGTGTGTTTGCATTTCTTGGCCTGTCCATTTTTAGTTTTCCTCACAAGTTTGAAATTTCCTT
TGTCATCTGGTGCATAGTGCTTGTACTATTTGGCAGAGCGGTAAACATTTTCCCTCTTTCCTACCTCCTG
AATTTCTTCCGGGATCATAAAATCACACCGAAGATGATGTTCATCATGTGGTTTAGTGGCCTGCGGGGAG
CCATCCCCTATGCCCTGAGCCTACACCTGGACCTGGAGCCCATGGAGAAGCGGCAGCTCATCGGCACCAC
CACCATCGTCATCGTGCTCTTCACCATCCTGCTGCTGGGCGGCAGCACCATGCCCCTCATTCGCCTCATG
GACATCGAGGACGCCAAGGCACACCGCAGGAACAAGAAGGACGTCAACCTCAGCAAGACTGAGAAGATGG
GCAACACTGTGGAGTCGGAGCACCTGTCGGAGCTCACGGAGGAGGAGTACGAGGCCCACTACATCAGGCG
GCAGGACCTTAAGGGCTTCGTGTGGCTGGACGCCAAGTACCTGAACCCCTTCTTCACTCGGAGGCTGACG
CAGGAGGACCTGCACCACGGGCGCATCCAGATGAAAACTCTCACCAACAAGTGGTACGAGGAGGTACGCC
AGGGCCCCTCCGGCTCCGAGGACGACGAGCAGGAGCTGCTCTGA

Translation (597 aa):
MGEKMAEEERFPNTTHEGFNVTLHTTLVVTTKLVLPTPGKPILPVQTGEQAQQEEQSSGMTIFFSLLVLA
ICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGY
SLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQGFFFVCVCVFVCFILQADVISKLNMTDSFAFG
SLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALDYF
LKMFFGSAALGTLTGLISALVLKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHY
THHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKFEISFVIWCIVLVLFGRAVNIFPLSYLL
NFFRDHKITPKMMFIMWFSGLRGAIPYALSLHLDLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLM
DIEDAKAHRRNKKDVNLSKTEKMGNTVESEHLSELTEEEYEAHYIRRQDLKGFVWLDAKYLNPFFTRRLT
QEDLHHGRIQMKTLTNKWYEEVRQGPSGSEDDEQELL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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