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Report for CCDS58820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58820.1 Public Homo sapiens 3 SLC4A7 24 110 108 CCDS HistoryNCBI Gene:9497Re-query CCDS DB by CCDS ID:58820.1Re-query CCDS DB by GeneID:9497See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58820.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455077.5 ENSP00000407382.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455077.5Link to Ensembl Protein Viewer:ENSP00000407382.1Re-query CCDS DB by Nucleotide ID:ENST00000455077Re-query CCDS DB by Protein ID:ENSP00000407382
Original member Current member NCBI NM_001258379.2 NP_001245308.1 Accepted alive Link to Nucleotide Sequence:NM_001258379.2Link to Protein Sequence:NP_001245308.1Re-query CCDS DB by Nucleotide ID:NM_001258379Re-query CCDS DB by Protein ID:NP_001245308Link to BLAST:NP_001245308.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245308.1 1131 Q9Y6M7-6 1131 100% 0 0

Chromosomal Locations for CCDS 58820.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 27376764 27376845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27379249 27379356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27383153 27383250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27385892 27386023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27389931 27390104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27391740 27391808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27394518 27394769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27394954 27395115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27397684 27397797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27398192 27398353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27400764 27400869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27403139 27403384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27404830 27404963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27409356 27409530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27411642 27411748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27418486 27418632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27420700 27420787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27421622 27421779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27424037 27424152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27433916 27434104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27436388 27436548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27437388 27437526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27448651 27448797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27452417 27452498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27484079 27484126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3396 nt):
ATGGAGGCTGATGGGGCCGGCGAGCAGATGAGACCGCTACTCACCCGGGGTCCTGATGAAGAAGCTGTTG
TGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAACTAGAAAGTCATAGAGC
TGTATATATTGGTGTTCACGTCCCGTTTAGTAAAGAGAGTCGTCGGCGTCATAGGCATCGCGGACACAAA
CATCACCACCGGAGAAGAAAAGATAAAGAATCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATGATA
CACCATCCCAGAGAGTTCAGTTTATCCTTGGTACTGAAGATGATGATGAAGAACATATTCCCCATGATCT
CTTCACGGAAATGGATGAACTGTGTTACAGAGATGGAGAAGAATATGAATGGAAAGAAACTGCTAGATGG
CTGAAATTTGAAGAGGATGTTGAAGATGGCGGTGACCGATGGAGTAAACCTTATGTGGCAACTCTCTCTT
TGCACAGTCTTTTTGAACTAAGGAGTTGCATCCTCAATGGAACAGTCATGCTGGATATGAGAGCAAGCAC
TCTAGATGAAATAGCAGATATGGTATTAGACAACATGATAGCTTCTGGCCAATTAGACGAGTCCATACGA
GAGAATGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAGAATGAGAAAAGATTCACCAGTCGGATTC
CTCTTGTTCGATCTTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATGGTAT
TTTGGCCTCTCCCCAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATTAAAGGTAATGGA
AGTGGTGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAGGTTGATATGAATTTCATGAGAAAAATTC
CTACGGGTGCTGAGGCATCCAACGTCCTGGTGGGCGAAGTAGACTTTTTGGAAAGGCCAATAATTGCATT
TGTGAGACTGGCTCCTGCTGTCCTCCTTACAGGGTTGACTGAGGTCCCTGTTCCAACCAGGTTTTTGTTT
TTGTTATTGGGTCCAGCGGGCAAGGCACCACAGTACCATGAAATTGGACGATCAATAGCCACTCTCATGA
CAGATGAGATTTTCCATGATGTAGCTTATAAAGCAAAAGACAGAAATGACCTCTTATCTGGAATTGATGA
ATTTTTAGATCAAGTAACTGTCCTACCTCCAGGAGAGTGGGATCCTTCTATACGCATAGAACCACCAAAA
AGTGTCCCTTCTCAGGAAAAGAGAAAGATTCCTGTGTTTCACAATGGATCTACCCCCACACTGGGTGAGA
CTCCTAAAGAGGCCGCTCATCATGCTGGGCCTGAGCTACAGAGGACTGGACGGCTTTTTGGTGGTTTGAT
ACTTGACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTG
GCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAG
CTACAGAAGGCAGAATAAGTGCAATAGAGTCTCTTTTTGGAGCATCATTAACTGGGATTGCCTATTCATT
GTTTGCTGGGCAACCTCTAACAATATTGGGGAGCACAGGTCCAGTTCTAGTGTTTGAAAAAATTTTATAT
AAATTCTGCAGAGATTATCAACTTTCTTATCTGTCTTTAAGAACCAGTATTGGTCTGTGGACTTCTTTTT
TGTGCATTGTTTTGGTTGCAACAGATGCAAGCAGCCTTGTGTGTTATATTACTCGATTTACAGAAGAGGC
TTTTGCAGCCCTTATTTGCATCATATTCATCTACGAGGCTTTGGAGAAGCTCTTTGATTTAGGAGAAACA
TATGCATTTAATATGCACAACAACTTAGATAAACTGACCAGCTACTCATGTGTATGTACTGAACCTCCAA
ACCCCAGCAATGAAACTCTAGCACAATGGAAGAAAGATAATATAACAGCACACAATATTTCCTGGAGAAA
TCTTACTGTTTCTGAATGTAAAAAACTTCGTGGTGTATTCTTGGGGTCAGCTTGTGGTCATCATGGACCT
TATATTCCAGATGTGCTCTTTTGGTGTGTCATCTTGTTTTTCACAACATTTTTTCTGTCTTCATTCCTCA
AGCAATTTAAGACCAAGCGTTACTTTCCTACCAAGGTGCGATCGACAATCAGTGATTTTGCTGTATTTCT
CACAATAGTAATAATGGTTACAATTGACTACCTTGTAGGAGTTCCATCTCCTAAACTTCATGTTCCTGAA
AAATTTGAGCCTACTCATCCAGAGAGAGGGTGGATCATAAGCCCACTGGGAGATAATCCTTGGTGGACCT
TATTAATAGCTGCTATTCCTGCTTTGCTTTGTACCATTCTCATCTTTATGGATCAACAAATCACAGCTGT
AATTATAAACAGAAAGGAACACAAATTGAAGAAAGGAGCTGGCTATCACCTTGATTTGCTCATGGTTGGC
GTTATGTTGGGAGTTTGCTCTGTCATGGGACTTCCATGGTTTGTGGCTGCAACAGTGTTGTCAATAAGTC
ATGTCAACAGCTTAAAAGTTGAATCTGAATGTTCTGCTCCAGGGGAACAACCCAAGTTTTTGGGAATTCG
TGAACAGCGGGTTACAGGGCTAATGATTTTTATTCTAATGGGCCTCTCTGTGTTCATGACTTCAGTCCTA
AAGTTTATTCCAATGCCTGTTCTGTATGGTGTTTTCCTTTATATGGGAGTTTCCTCATTAAAAGGAATCC
AGTTATTTGACCGTATAAAATTATTTGGAATGCCTGCTAAGCATCAGCCTGATTTGATATACCTCCGTTA
TGTGCCGCTCTGGAAGGTCCATATTTTCACAGTCATTCAGCTTACTTGTTTGGTCCTTTTATGGGTGATA
AAAGTTTCAGCTGCTGCAGTGGTTTTTCCCATGATGGTTCTTGCATTAGTGTTTGTGCGCAAACTCATGG
ACCTGTGTTTCACGAAGAGAGAACTTAGTTGGCTTGATGATCTTATGCCAGAAAGTAAGAAAAAGAAAGA
AGATGACAAAAAGAAAAAAGAGAAAGAGGAAGCTGAACGGATGCTTCAAGATGATGATGATACTGTGCAC
CTTCCATTTGAAGGGGGAAGTCTCTTGCAAATTCCAGTCAAGGCCCTAAAATATAGTGTTGATCCCTCAA
TTGTTAACATATCAGATGAAATGGCCAAAACTGCACAGTGGAAGGCACTTTCCATGAATACTGAGAATGC
CAAAGTAACCAGATCTAACATGAGTCCTGATAAACCTGTGAGTGTGAAAATAAGTTTTGAAGATGAACCA
AGAAAGAAATACGTGGATGCTGAAACTTCATTATAG

Translation (1131 aa):
MEADGAGEQMRPLLTRGPDEEAVVDLGKTSSTVNTKFEKEELESHRAVYIGVHVPFSKESRRRHRHRGHK
HHHRRRKDKESDKEDGRESPSYDTPSQRVQFILGTEDDDEEHIPHDLFTEMDELCYRDGEEYEWKETARW
LKFEEDVEDGGDRWSKPYVATLSLHSLFELRSCILNGTVMLDMRASTLDEIADMVLDNMIASGQLDESIR
ENVREALLKRHHHQNEKRFTSRIPLVRSFADIGKKHSDPHLLERNGILASPQSAPGNLDNSKSGEIKGNG
SGGSRENSTVDFSKVDMNFMRKIPTGAEASNVLVGEVDFLERPIIAFVRLAPAVLLTGLTEVPVPTRFLF
LLLGPAGKAPQYHEIGRSIATLMTDEIFHDVAYKAKDRNDLLSGIDEFLDQVTVLPPGEWDPSIRIEPPK
SVPSQEKRKIPVFHNGSTPTLGETPKEAAHHAGPELQRTGRLFGGLILDIKRKAPFFLSDFKDALSLQCL
ASILFLYCACMSPVITFGGLLGEATEGRISAIESLFGASLTGIAYSLFAGQPLTILGSTGPVLVFEKILY
KFCRDYQLSYLSLRTSIGLWTSFLCIVLVATDASSLVCYITRFTEEAFAALICIIFIYEALEKLFDLGET
YAFNMHNNLDKLTSYSCVCTEPPNPSNETLAQWKKDNITAHNISWRNLTVSECKKLRGVFLGSACGHHGP
YIPDVLFWCVILFFTTFFLSSFLKQFKTKRYFPTKVRSTISDFAVFLTIVIMVTIDYLVGVPSPKLHVPE
KFEPTHPERGWIISPLGDNPWWTLLIAAIPALLCTILIFMDQQITAVIINRKEHKLKKGAGYHLDLLMVG
VMLGVCSVMGLPWFVAATVLSISHVNSLKVESECSAPGEQPKFLGIREQRVTGLMIFILMGLSVFMTSVL
KFIPMPVLYGVFLYMGVSSLKGIQLFDRIKLFGMPAKHQPDLIYLRYVPLWKVHIFTVIQLTCLVLLWVI
KVSAAAVVFPMMVLALVFVRKLMDLCFTKRELSWLDDLMPESKKKKEDDKKKKEKEEAERMLQDDDDTVH
LPFEGGSLLQIPVKALKYSVDPSIVNISDEMAKTAQWKALSMNTENAKVTRSNMSPDKPVSVKISFEDEP
RKKYVDAETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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