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Report for CCDS58901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58901.1 Public Homo sapiens 4 UGT2A1 24 110 108 CCDS HistoryNCBI Gene:10941Re-query CCDS DB by CCDS ID:58901.1Re-query CCDS DB by GeneID:10941See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58901.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286604.9 ENSP00000286604.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000286604.9Link to Ensembl Protein Viewer:ENSP00000286604.4Re-query CCDS DB by Nucleotide ID:ENST00000286604Re-query CCDS DB by Protein ID:ENSP00000286604
Original member Current member NCBI NM_001252275.3 NP_001239204.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001252275.3Link to Protein Sequence:NP_001239204.2Re-query CCDS DB by Nucleotide ID:NM_001252275Re-query CCDS DB by Protein ID:NP_001239204Link to BLAST:NP_001239204.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239204.2 527 P0DTE4 527 100% 0 0

Chromosomal Locations for CCDS 58901.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 69589372 69589651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 69594477 69594696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 69595162 69595249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 69599246 69599394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 69635691 69635822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 69646930 69647644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGTTAAACAACCTTCTGCTGTTCTCCCTTCAGATAAGTCTCATAGGAACCACTCTTGGTGGGAATGTTT
TGATTTGGCCAATGGAAGGTAGTCATTGGCTAAATGTTAAGATAATTATAGATGAGCTCATTAAAAAGGA
GCATAATGTGACTGTCCTAGTTGCCTCTGGTGCACTTTTCATCACACCAACCTCTAACCCATCTCTGACA
TTTGAAATATATAAGGTGCCCTTTGGCAAAGAAAGAATAGAAGGAGTAATTAAGGACTTCGTTTTGACAT
GGCTGGAAAATAGACCATCTCCTTCAACCATTTGGAGATTCTATCAGGAGATGGCCAAAGTAATCAAGGA
CTTCCACATGGTGTCTCAGGAGATCTGTGATGGCGTTCTTAAAAACCAACAGCTGATGGCAAAGCTAAAG
AAAAGCAAGTTTGAAGTCCTGGTGTCTGATCCAGTATTTCCTTGTGGCGATATAGTAGCTTTAAAACTTG
GAATTCCATTTATGTACTCCTTGAGGTTTTCTCCAGCCTCAACAGTGGAAAAGCACTGTGGGAAGGTACC
ATACCCTCCTTCCTATGTTCCTGCTGTTTTATCAGAACTCACCGACCAAATGTCTTTCACTGACAGAATA
AGAAATTTCATCTCCTACCACCTACAGGACTACATGTTTGAAACTCTTTGGAAATCATGGGATTCATACT
ATAGTAAAGCTTTAGGTGGACTCTTACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGGATCTTGGCTCACT
GCAACCTCTGCTTCCCGGGTTCAAGCGATTCTCCCGCCTCAGCCTCCATTGTAGTTGGGATTACAGGCTG
CCAGCAGGAAGACCCACTACGTTATGTGAGACTATGGGGAAAGCTGAAATTTGGTTAATCCGAACATATT
GGGATTTTGAATTTCCTCGTCCATACTTACCTAATTTTGAGTTTGTTGGAGGATTGCACTGCAAACCTGC
CAAACCTTTACCTAAGGTTTTATGGAGATACAAAGGAAAGAAACCAGCCACATTAGGAAACAATACTCAG
CTCTTTGATTGGATACCCCAGAATGATCTTCTTGGACATCCCAAAACCAAAGCTTTTATCACTCATGGTG
GAACTAATGGGATCTACGAAGCTATTTACCACGGAGTCCCTATGGTGGGAGTTCCCATGTTTGCTGATCA
GCCTGATAACATTGCTCACATGAAGGCCAAAGGAGCAGCTGTGGAAGTGAACCTAAACACAATGACAAGT
GTGGATTTGCTTAGCGCTTTGAGAACAGTCATTAATGAACCTTCTTATAAAGAGAATGCTATGAGGTTAT
CAAGAATTCACCATGATCAACCTGTAAAGCCCCTGGATCGAGCAGTCTTCTGGATCGAGTTTGTCATGCG
CCACAAAGGAGCCAAGCACCTTCGGGTTGCAGCCCATGACCTCACCTGGTTCCAGTACCACTCTTTGGAT
GTAATTGGGTTCTTGCTGGTCTGTGTGACAACGGCTATATTTTTGGTCATACAATGTTGTTTGTTTTCCT
GTCAAAAATTTGGTAAGATAGGAAAGAAGAAAAAAAGAGAATAG

Translation (527 aa):
MLNNLLLFSLQISLIGTTLGGNVLIWPMEGSHWLNVKIIIDELIKKEHNVTVLVASGALFITPTSNPSLT
FEIYKVPFGKERIEGVIKDFVLTWLENRPSPSTIWRFYQEMAKVIKDFHMVSQEICDGVLKNQQLMAKLK
KSKFEVLVSDPVFPCGDIVALKLGIPFMYSLRFSPASTVEKHCGKVPYPPSYVPAVLSELTDQMSFTDRI
RNFISYHLQDYMFETLWKSWDSYYSKALGGLLLCCPGWSAVADLGSLQPLLPGFKRFSRLSLHCSWDYRL
PAGRPTTLCETMGKAEIWLIRTYWDFEFPRPYLPNFEFVGGLHCKPAKPLPKVLWRYKGKKPATLGNNTQ
LFDWIPQNDLLGHPKTKAFITHGGTNGIYEAIYHGVPMVGVPMFADQPDNIAHMKAKGAAVEVNLNTMTS
VDLLSALRTVINEPSYKENAMRLSRIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRVAAHDLTWFQYHSLD
VIGFLLVCVTTAIFLVIQCCLFSCQKFGKIGKKKKRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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