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Report for CCDS5930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5930.1 Public Homo sapiens 7 GALNT11 24 110 108 CCDS HistoryNCBI Gene:63917Re-query CCDS DB by CCDS ID:5930.1Re-query CCDS DB by GeneID:63917See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430044.7 ENSP00000395122.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000430044.7Link to Ensembl Protein Viewer:ENSP00000395122.2Re-query CCDS DB by Nucleotide ID:ENST00000430044Re-query CCDS DB by Protein ID:ENSP00000395122
Original member Current member EBI ENST00000434507.5 ENSP00000416787.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434507.5Link to Ensembl Protein Viewer:ENSP00000416787.1Re-query CCDS DB by Nucleotide ID:ENST00000434507Re-query CCDS DB by Protein ID:ENSP00000416787
Original member Current member NCBI NM_001371458.1 NP_001358387.1 Accepted alive Link to Nucleotide Sequence:NM_001371458.1Link to Protein Sequence:NP_001358387.1Re-query CCDS DB by Nucleotide ID:NM_001371458Re-query CCDS DB by Protein ID:NP_001358387Link to BLAST:NP_001358387.1
Original member Current member NCBI NM_001371459.1 NP_001358388.1 Accepted alive Link to Nucleotide Sequence:NM_001371459.1Link to Protein Sequence:NP_001358388.1Re-query CCDS DB by Nucleotide ID:NM_001371459Re-query CCDS DB by Protein ID:NP_001358388Link to BLAST:NP_001358388.1
Original member Current member NCBI NM_001371460.1 NP_001358389.1 Accepted alive Link to Nucleotide Sequence:NM_001371460.1Link to Protein Sequence:NP_001358389.1Re-query CCDS DB by Nucleotide ID:NM_001371460Re-query CCDS DB by Protein ID:NP_001358389Link to BLAST:NP_001358389.1
Original member Current member NCBI NM_001371461.1 NP_001358390.1 Accepted alive Link to Nucleotide Sequence:NM_001371461.1Link to Protein Sequence:NP_001358390.1Re-query CCDS DB by Nucleotide ID:NM_001371461Re-query CCDS DB by Protein ID:NP_001358390Link to BLAST:NP_001358390.1
Original member Current member NCBI NM_001371462.1 NP_001358391.1 Accepted alive Link to Nucleotide Sequence:NM_001371462.1Link to Protein Sequence:NP_001358391.1Re-query CCDS DB by Nucleotide ID:NM_001371462Re-query CCDS DB by Protein ID:NP_001358391Link to BLAST:NP_001358391.1
Original member Current member NCBI NM_001371463.1 NP_001358392.1 Accepted alive Link to Nucleotide Sequence:NM_001371463.1Link to Protein Sequence:NP_001358392.1Re-query CCDS DB by Nucleotide ID:NM_001371463Re-query CCDS DB by Protein ID:NP_001358392Link to BLAST:NP_001358392.1
Original member Current member NCBI NM_022087.4 NP_071370.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022087.4Link to Protein Sequence:NP_071370.2Re-query CCDS DB by Nucleotide ID:NM_022087Re-query CCDS DB by Protein ID:NP_071370Link to BLAST:NP_071370.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358387.1 608 Q8NCW6-1 608 100% 0 0
NP_001358388.1 608 Q8NCW6-1 608 100% 0 0
NP_001358389.1 608 Q8NCW6-1 608 100% 0 0
NP_001358390.1 608 Q8NCW6-1 608 100% 0 0
NP_001358391.1 608 Q8NCW6-1 608 100% 0 0
NP_001358392.1 608 Q8NCW6-1 608 100% 0 0
NP_071370.2 608 Q8NCW6-1 608 100% 0 0

Chromosomal Locations for CCDS 5930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 152094228 152094522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152100798 152100921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152103112 152103278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152105245 152105370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152108038 152108287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152110528 152110645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152113246 152113398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152117157 152117375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152118678 152118782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152120831 152120968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152121546 152121677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGGAAGTGTCACAGTTCGGTATTTCTGTTATGGGTGCCTTTTTACATCTGCGACCTGGACAGTTTTGC
TTTTTGTTTATTTCAACTTCAGTGAAGTGACTCAGCCACTTAAGAATGTGCCCGTCAAGGGGTCTGGGCC
CCACGGACCATCTCCAAAAAAATTCTATCCCCGTTTCACTCGAGGCCCAAGTCGAGTGCTCGAGCCACAG
TTCAAAGCAAACAAAATTGACGATGTGATAGACAGTCGTGTTGAAGATCCAGAAGAAGGCCACTTGAAAT
TCTCTTCTGAATTAGGTATGATTTTTAATGAACGCGATCAAGAGTTGAGAGACTTGGGCTATCAGAAACA
TGCTTTTAATATGCTTATCAGTGACCGCTTGGGCTACCACAGAGATGTGCCAGACACAAGGAATGCAGCA
TGTAAAGAAAAGTTCTACCCACCTGACCTGCCAGCTGCTAGTGTTGTTATCTGTTTCTATAATGAAGCGT
TTTCTGCCTTGCTTCGGACAGTGCACAGTGTCATAGACCGCACGCCAGCACACCTGCTTCATGAGATCAT
CCTTGTGGATGATGATAGTGACTTTGATGATTTGAAAGGAGAACTAGATGAATATGTCCAAAAATACCTC
CCTGGAAAAATTAAAGTCATAAGAAATACAAAGCGTGAGGGGTTGATTCGAGGGAGAATGATTGGCGCGG
CCCACGCGACAGGAGAAGTCCTTGTGTTCCTGGACAGCCACTGTGAAGTGAATGTGATGTGGCTGCAGCC
CTTGCTGGCCGCCATCCGTGAGGACCGGCACACCGTGGTGTGCCCAGTGATTGACATCATCAGCGCCGAC
ACGCTGGCCTACAGCTCGTCCCCTGTCGTCCGCGGAGGGTTCAACTGGGGACTGCACTTCAAATGGGATC
TTGTCCCCCTTTCTGAGCTAGGACGAGCGGAGGGAGCCACTGCACCAATAAAGTCACCAACAATGGCTGG
AGGTTTGTTTGCCATGAACAGACAGTATTTCCATGAACTTGGACAGTATGATAGTGGCATGGATATCTGG
GGAGGAGAAAATTTGGAAATATCATTTCGGATCTGGATGTGTGGCGGTAAGCTCTTCATCATCCCTTGCT
CTAGAGTAGGACACATTTTCCGAAAAAGGCGACCATATGGATCTCCCGAAGGCCAGGACACCATGACACA
CAACTCTTTGCGGCTGGCACATGTCTGGTTGGATGAATACAAGGAGCAGTATTTTTCCTTAAGACCTGAC
CTGAAGACGAAAAGCTATGGCAATATCAGTGAGCGTGTGGAACTGAGAAAGAAGTTGGGCTGTAAATCAT
TTAAATGGTATTTGGATAATGTATACCCAGAGATGCAGATATCTGGGTCCCACGCCAAACCCCAACAACC
CATTTTTGTCAATAGAGGGCCAAAACGACCCAAAGTCCTTCAACGTGGAAGGCTCTATCACCTCCAGACC
AACAAATGCCTGGTGGCCCAGGGCCGCCCAAGTCAGAAGGGAGGTCTCGTGGTGCTTAAGGCCTGTGACT
ACAGTGACCCAAATCAGATCTGGATCTATAATGAAGAGCATGAATTGGTTTTAAATAGTCTCCTTTGTCT
AGATATGTCAGAGACTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGGTCAGGAGGATCCCAG
CAGTGGACCTTTGGGAAAAACAATCGGCTATACCAGGTGTCGGTTGGACAGTGCCTGAGAGCAGTGGATC
CCCTGGGTCAGAAGGGCTCTGTCGCCATGGCGATCTGCGATGGCTCCTCTTCACAGCAGTGGCATTTGGA
AGGTTAA

Translation (608 aa):
MGSVTVRYFCYGCLFTSATWTVLLFVYFNFSEVTQPLKNVPVKGSGPHGPSPKKFYPRFTRGPSRVLEPQ
FKANKIDDVIDSRVEDPEEGHLKFSSELGMIFNERDQELRDLGYQKHAFNMLISDRLGYHRDVPDTRNAA
CKEKFYPPDLPAASVVICFYNEAFSALLRTVHSVIDRTPAHLLHEIILVDDDSDFDDLKGELDEYVQKYL
PGKIKVIRNTKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLLAAIREDRHTVVCPVIDIISAD
TLAYSSSPVVRGGFNWGLHFKWDLVPLSELGRAEGATAPIKSPTMAGGLFAMNRQYFHELGQYDSGMDIW
GGENLEISFRIWMCGGKLFIIPCSRVGHIFRKRRPYGSPEGQDTMTHNSLRLAHVWLDEYKEQYFSLRPD
LKTKSYGNISERVELRKKLGCKSFKWYLDNVYPEMQISGSHAKPQQPIFVNRGPKRPKVLQRGRLYHLQT
NKCLVAQGRPSQKGGLVVLKACDYSDPNQIWIYNEEHELVLNSLLCLDMSETRSSDPPRLMKCHGSGGSQ
QWTFGKNNRLYQVSVGQCLRAVDPLGQKGSVAMAICDGSSSQQWHLEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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