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Report for CCDS61106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61106.1 Public Homo sapiens 12 SLC38A1 24 110 108 CCDS HistoryNCBI Gene:81539Re-query CCDS DB by CCDS ID:61106.1Re-query CCDS DB by GeneID:81539See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61106.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000552197.5 ENSP00000449756.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552197.5Link to Ensembl Protein Viewer:ENSP00000449756.1Re-query CCDS DB by Nucleotide ID:ENST00000552197Re-query CCDS DB by Protein ID:ENSP00000449756
Original member Current member EBI ENST00000612161.4 ENSP00000478907.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612161.4Link to Ensembl Protein Viewer:ENSP00000478907.1Re-query CCDS DB by Nucleotide ID:ENST00000612161Re-query CCDS DB by Protein ID:ENSP00000478907
Original member Current member NCBI NM_001278390.1 NP_001265319.1 Accepted alive Link to Nucleotide Sequence:NM_001278390.1Link to Protein Sequence:NP_001265319.1Re-query CCDS DB by Nucleotide ID:NM_001278390Re-query CCDS DB by Protein ID:NP_001265319Link to BLAST:NP_001265319.1

Chromosomal Locations for CCDS 61106.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 46196127 46196276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46197720 46197817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46197919 46198060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46198625 46198743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46201098 46201198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46203010 46203089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46204301 46204417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46204532 46204590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46206080 46206162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46207155 46207236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46207529 46207621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46209054 46209127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46229153 46229268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46229564 46229639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46239679 46239800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGATGCATTTCAAAAGTGGACTCGAATTAACTGAGTTGCAAAACATGACAGTGCCCGAGGATGATAACA
TTAGCAATGACTCCAATGATTTCACCGAAGTAGAAAATGGTCAGATAAATAGCAAGTTTATTTCTGATCG
TGAAAGTAGAAGAAGTCTCACAAACAGCCATTTGGAAAAAAAGAAGTGTGATGAGTATATTCCAGGTACA
ACCTCCTTAGGCATGTCTGTTTTTAACCTAAGCAACGCCATTATGGGCAGTGGGATTTTGGGACTCGCCT
TTGCCCTGGCAAACACTGGAATCCTACTTTTTCTGGTACTTTTGACTTCAGTGACATTGCTGTCTATATA
TTCAATAAACCTCCTATTGATCTGTTCAAAAGAAACAGGCTGCATGGTGTATGAAAAGCTGGGGGAACAA
GTCTTTGGCACCACAGGGAAGTTCGTAATCTTTGGAGCCACCTCTCTACAGAACACTGGAGCAATGCTGA
GCTACCTCTTCATCGTAAAAAATGAACTACCCTCTGCCATAAAGTTTCTAATGGGAAAGGAAGAGACATT
TTCAGCCTGGTACGTGGATGGCCGCGTTCTGGTGGTGATAGTTACCTTTGGCATAATTCTCCCTCTGTGT
CTCTTGAAGAACTTAGGGTATCTTGGCTATACTAGTGGATTTTCCTTGAGCTGTATGGTTTTTTTCCTAA
TTGTGGTTATTTACAAGAAATTTCAAATTCCCTGCATTGTTCCAGAGCTAAATTCAACAATAAGTGCTAA
TTCAACAAATGCTGACACGTGTACGCCAAAATATGTTACCTTCAATTCAAAGACCGTGTATGCTTTACCC
ACCATTGCATTTGCATTTGTTTGCCACCCGTCAGTCCTGCCAATTTACAGTGAGCTTAAAGACCGATCAC
AGAAAAAAATGCAGATGGTTTCAAACATCTCCTTTTTCGCCATGTTTGTTATGTACTTCTTGACTGCCAT
TTTTGGCTACTTGACATTCTATGACAACGTGCAGTCCGACCTCCTTCACAAATATCAGAGTAAAGATGAC
ATTCTCATCCTGACAGTGCGGCTGGCTGTCATTGTTGCTGTGATCCTCACAGTGCCGGTGTTATTTTTCA
CGGTTCGTTCATCTTTATTTGAACTGGCTAAGAAAACAAAGTTTAATTTATGTCGTCATACCGTGGTTAC
CTGCATACTCTTGGTTGTTATCAACTTGTTGGTGATCTTCATACCCTCCATGAAGGATATTTTTGGAGTC
GTAGGAGTTACATCTGCTAACATGCTTATTTTCATTCTTCCTTCATCTCTTTATTTAAAAATCACAGACC
AGGATGGAGATAAAGGAACTCAAAGAATTTGGCTCTTTCTCTTCCTCCAGTTTCCAGTCCAGCCCTGTTG
GCTCTCAGAATGCATCATCCTTCTCCCTGCAGCGCTCTCACTGAACATGCTCAAGCGCAAGGAACTTATA
ATCTTGTGTTCTCTGGATTCTGGATTTAGTAATCTGTATTAG

Translation (503 aa):
MMHFKSGLELTELQNMTVPEDDNISNDSNDFTEVENGQINSKFISDRESRRSLTNSHLEKKKCDEYIPGT
TSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLVLLTSVTLLSIYSINLLLICSKETGCMVYEKLGEQ
VFGTTGKFVIFGATSLQNTGAMLSYLFIVKNELPSAIKFLMGKEETFSAWYVDGRVLVVIVTFGIILPLC
LLKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCIVPELNSTISANSTNADTCTPKYVTFNSKTVYALP
TIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFLTAIFGYLTFYDNVQSDLLHKYQSKDD
ILILTVRLAVIVAVILTVPVLFFTVRSSLFELAKKTKFNLCRHTVVTCILLVVINLLVIFIPSMKDIFGV
VGVTSANMLIFILPSSLYLKITDQDGDKGTQRIWLFLFLQFPVQPCWLSECIILLPAALSLNMLKRKELI
ILCSLDSGFSNLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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