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Report for CCDS6238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6238.1 Public Homo sapiens 8 CA3 24 110 108 CCDS HistoryNCBI Gene:761Re-query CCDS DB by CCDS ID:6238.1Re-query CCDS DB by GeneID:761See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285381.3 ENSP00000285381.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285381.3Link to Ensembl Protein Viewer:ENSP00000285381.2Re-query CCDS DB by Nucleotide ID:ENST00000285381Re-query CCDS DB by Protein ID:ENSP00000285381
Original member Current member NCBI NM_005181.4 NP_005172.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005181.4Link to Protein Sequence:NP_005172.1Re-query CCDS DB by Nucleotide ID:NM_005181Re-query CCDS DB by Protein ID:NP_005172Link to BLAST:NP_005172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005172.1 260 P07451 260 100% 0 0

Chromosomal Locations for CCDS 6238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85438910 85438943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85439712 85439909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85442073 85442191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85444034 85444126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85445156 85445218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85446142 85446297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85448034 85448153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGCCAAGGAGTGGGGCTACGCCAGTCACAACGGTCCTGACCACTGGCATGAACTTTTCCCAAATGCCA
AGGGGGAAAACCAGTCGCCCGTTGAGCTGCATACTAAAGACATCAGGCATGACCCTTCTCTGCAGCCATG
GTCTGTGTCTTATGATGGTGGCTCTGCCAAGACCATCCTGAATAATGGGAAGACCTGCCGAGTTGTATTT
GATGATACTTATGATAGGTCAATGCTGAGAGGGGGTCCTCTCCCTGGACCCTACCGACTTCGCCAGTTTC
ATCTTCACTGGGGCTCTTCGGATGATCATGGCTCTGAGCACACCGTGGATGGAGTCAAGTATGCAGCGGA
GCTTCATTTGGTTCACTGGAACCCGAAGTATAACACTTTTAAAGAAGCCCTGAAGCAGCGCGATGGGATC
GCTGTGATTGGCATTTTTCTGAAGATAGGACATGAGAATGGCGAGTTCCAGATTTTCCTTGATGCATTGG
ACAAGATTAAGACAAAGGGCAAGGAGGCGCCCTTCACAAAGTTTGACCCATCCTGCCTGTTCCCGGCATG
CCGGGACTACTGGACCTACCAGGGCTCATTCACCACGCCGCCCTGCGAGGAATGCATTGTGTGGCTGCTG
CTGAAGGAGCCCATGACCGTGAGCTCTGACCAGATGGCCAAGCTGCGGAGCCTCCTCTCCAGTGCTGAGA
ACGAGCCCCCAGTGCCTCTTGTGAGCAACTGGCGACCTCCACAGCCTATCAATAACAGGGTGGTGAGAGC
TTCCTTCAAATGA

Translation (260 aa):
MAKEWGYASHNGPDHWHELFPNAKGENQSPVELHTKDIRHDPSLQPWSVSYDGGSAKTILNNGKTCRVVF
DDTYDRSMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPKYNTFKEALKQRDGI
AVIGIFLKIGHENGEFQIFLDALDKIKTKGKEAPFTKFDPSCLFPACRDYWTYQGSFTTPPCEECIVWLL
LKEPMTVSSDQMAKLRSLLSSAENEPPVPLVSNWRPPQPINNRVVRASFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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