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Report for CCDS6271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6271.1 Public Homo sapiens 8 PTDSS1 24 110 108 CCDS HistoryNCBI Gene:9791Re-query CCDS DB by CCDS ID:6271.1Re-query CCDS DB by GeneID:9791See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517309.6 ENSP00000430548.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000517309.6Link to Ensembl Protein Viewer:ENSP00000430548.1Re-query CCDS DB by Nucleotide ID:ENST00000517309Re-query CCDS DB by Protein ID:ENSP00000430548
Original member Current member NCBI NM_014754.3 NP_055569.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014754.3Link to Protein Sequence:NP_055569.1Re-query CCDS DB by Nucleotide ID:NM_014754Re-query CCDS DB by Protein ID:NP_055569Link to BLAST:NP_055569.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055569.1 473 P48651-1 473 100% 0 0

Chromosomal Locations for CCDS 6271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 96262041 96262219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96273299 96273390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96284109 96284153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96287022 96287146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96295098 96295256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96299694 96299845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96304040 96304181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96306444 96306556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96309557 96309622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96320246 96320345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96330213 96330281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96331026 96331095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96333457 96333566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCGTCCTGCGTGGGGAGCCGGACCCTAAGCAAGGATGATGTGAACTACAAAATGCATTTCCGGATGA
TC
AACGAGCAGCAAGTGGAGGACATCACCATTGACTTCTTCTACCGGCCGCATACCATCACCCTGCTCAG
C
TTCACCATCGTCAGCCTCATGTACTTCGCCTTTACCAGGGATGACTCTGTTCCAGAAGACAACATCTGG
AGA
GGCATCCTCTCTGTTATTTTCTTCTTTCTTATCATCAGTGTGTTAGCTTTCCCCAATGGTCCGTTCA
CT
CGACCTCATCCAGCCTTATGGCGAATGGTTTTTGGACTCAGTGTGCTCTACTTCCTGTTCCTGGTATT
C
CTACTCTTCCTGAATTTCGAGCAGGTTAAATCTCTAATGTATTGGCTAGATCCAAATCTTCGATACGCC
ACA
AGGGAAGCAGATGTCATGGAGTATGCTGTGAACTGCCATGTGATCACCTGGGAGAGGATTATCAGCC
AC
TTTGATATTTTTGCATTTGGACATTTCTGGGGCTGGGCCATGAAGGCCTTGCTGATCCGTAGTTACGG
T
CTCTGCTGGACAATCAGTATTACCTGGGAGCTGACTGAGCTCTTCTTCATGCATCTCCTCCCCAATTTT
GCC
GAGTGCTGGTGGGATCAAGTCATTCTGGACATCCTGTTGTGCAATGGCGGTGGCATTTGGCTGGGCA
TG
GTCGTTTGCCGGTTTTTAGAGATGAGGACTTACCACTGGGCAAGCTTCAAGGACATTCATACCACCAC
C
GGGAAGATCAAGAGAGCTGTTCTGCAGTTCACTCCTGCTAGCTGGACCTATGTTCGATGGTTTGACCCC
AAA
TCTTCTTTTCAGAGAGTAGCTGGAGTGTACCTTTTCATGATCATCTGGCAGCTGACTGAGTTGAATA
CC
TTCTTCTTGAAGCATATCTTTGTGTTCCAAGCCAGTCATCCATTAAGTTGGGGTAGAATTCTCTTTAT
T
GGTGGCATCACAGCTCCCACAGTGAGACAGTACTACGCTTACCTCACCGACACACAGTGCAAGCGCGTA
GGA
ACACAATGCTGGGTGTTTGGGGTCATTGGTTTCCTGGAGGCCATTGTTTGCATAAAATTTGGACAAG
AT
CTCTTCTCTAAGACCCAAATACTCTATGTTGTGCTTTGGCTTCTTTGCGTGGCTTTCACCACTTTCCT
C
TGTCTGTACGGCATGATTTGGTATGCAGAACACTATGGTCACCGAGAAAAGACCTACTCGGAGTGTGAA
GAT
GGCACCTACAGTCCAGAGATCTCCTGGCATCACAGGAAAGGGACAAAAGGTTCTGAAGACAGCCCAC
CC
AAGCATGCAGGCAACAACGAAAGCCATTCTTCCAGGAGAAGGAATCGGCATTCCAAGTCAAAAGTCAC
C
AATGGCGTTGGAAAGAAATGA


Translation (473 aa):
MASCVGSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTRDDSVPEDNIW
R
GILSVIFFFLIISVLAFPN
GPFTRPHPALWRMVFGLSVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYA
T
READVM
EYAVNCHVITWERIISHFDIFAFGHFWGWAMKALLIRSYGLCWTISITWELTELFFMHLLPNF
A
ECWWDQVILDILLCNGGGIWLGMVVCRFLEMRTYHWASF
KDIHTTTGKIKRAVLQFTPASWTYVRWFDP
K
SSFQRVAGVYLFMIIWQ
LTELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRV
G
TQCWVF
GVIGFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIWYAEHYGHREKTYSECE
D
GTYSPEISWHHRKGTK
GSEDSPPKHAGNNESHSSRRRNRHSKSKVTNGVGKK



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 Genome Browser Links:   Ensembl Genome Browser
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