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Report for CCDS6493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6493.1 Public Homo sapiens 9 SLC24A2 24 110 108 CCDS HistoryNCBI Gene:25769Re-query CCDS DB by CCDS ID:6493.1Re-query CCDS DB by GeneID:25769See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341998.7 ENSP00000344801.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341998.7Link to Ensembl Protein Viewer:ENSP00000344801.1Re-query CCDS DB by Nucleotide ID:ENST00000341998Re-query CCDS DB by Protein ID:ENSP00000344801
Original member Current member NCBI NM_001375850.1 NP_001362779.1 Accepted alive Link to Nucleotide Sequence:NM_001375850.1Link to Protein Sequence:NP_001362779.1Re-query CCDS DB by Nucleotide ID:NM_001375850Re-query CCDS DB by Protein ID:NP_001362779Link to BLAST:NP_001362779.1
Original member Current member NCBI NM_020344.4 NP_065077.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020344.4Link to Protein Sequence:NP_065077.1Re-query CCDS DB by Nucleotide ID:NM_020344Re-query CCDS DB by Protein ID:NP_065077Link to BLAST:NP_065077.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362779.1 661 Q9UI40-1 661 100% 0 0
NP_065077.1 661 Q9UI40-1 661 100% 0 0

Chromosomal Locations for CCDS 6493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19516153 19516402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19520894 19521060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19528049 19528138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19550137 19550268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19573351 19573469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19576924 19577022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19597229 19597279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19619584 19619692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19622261 19622299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19785937 19786866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGGATCTGCAACAAAGCACCACCATCACTTCCCTAGAGAAATGGTGTTTGGATGAGTCACTGTCTGGCT
GCAGAAGACATTATAGTGTCAAGAAAAAACTGAAGTTAATTCGAGTCTTAGGCCTTTTCATGGGTCTGGT
AGCCATTAGCACTGTCTCATTTTCAATCAGTGCCTTTTCTGAGACAGATACACAGAGCACAGGAGAGGCC
AGTGTTGTAAGTGGCCCTAGGGTAGCACAGGGTTACCATCAGAGAACTCTCTTAGATTTAAATGACAAGA
TTCTGGATTATACTCCACAGCCACCTCTTTCTAAGGAAGGCGAGTCTGAGAATAGTACAGATCACGCCCA
AGGAGACTACCCGAAAGACATCTTTTCCCTTGAGGAGAGAAGAAAAGGTGCGATCATTCTGCATGTCATT
GGAATGATCTACATGTTCATAGCCTTAGCCATTGTCTGTGATGAGTTCTTTGTTCCTTCTTTGACTGTCA
TCACTGAAAAACTGGGCATCTCTGATGATGTGGCTGGAGCCACCTTCATGGCTGCAGGAGGGTCAGCCCC
AGAACTTTTCACATCTCTCATAGGGGTATTTATCGCTCACAGCAACGTTGGCATAGGCACAATTGTAGGT
TCAGCAGTATTCAACATCCTCTTTGTTATTGGCATGTGTGCTCTGTTTTCTAGAGAAATCTTAAACCTGA
CATGGTGGCCGCTCTTTCGAGATGTGTCTTTCTACATTGTTGACTTGATCATGCTGATCATATTTTTCCT
GGATAATGTCATCATGTGGTGGGAAAGCTTGCTTCTCTTAACAGCTTATTTTTGCTATGTGGTTTTCATG
AAATTCAACGTCCAAGTAGAAAAATGGGTGAAGCAAATGATAAACCGCAATAAGGTCGTCAAGGTGACAG
CACCAGAAGCCCAAGCAAAGCCATCTGCAGCCAGGGACAAGGATGAACCAACTCTACCGGCTAAGCCGCG
TCTCCAGCGAGGTGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAACTCATG
ATACACACCCTTGACCCACTCGCCGAAGAACTTGGATCATATGGAAAACTAAAATATTATGACACAATGA
CTGAAGAAGGGAGGTTCAGAGAAAAGGCTTCAATTCTCCACAAGATCGCCAAGAAGAAATGTCATGTGGA
TGAGAACGAGAGGCAGAATGGGGCTGCCAACCACGTGGAAAAAATTGAGCTTCCAAACAGCACCAGCACA
GATGTTGAAATGACACCATCCAGTGATGCTTCAGAACCTGTACAAAATGGAAATCTCTCCCACAACATTG
AAGGTGCAGAAGCCCAGACCGCTGATGAGGAGGAGGACCAGCCTCTCAGCCTTGCCTGGCCTTCTGAAAC
CCGCAAGCAAGTCACGTTTCTGATTGTTTTCCCCATAGTGTTTCCTCTCTGGATTACGTTACCTGACGTT
CGCAAACCTTCATCGAGGAAGTTTTTTCCCATCACGTTCTTTGGCTCCATTACCTGGATTGCAGTATTCT
CTTACTTGATGGTCTGGTGGGCGCACCAGGTTGGAGAGACAATTGGCATCAGTGAAGAGATTATGGGCCT
GACCATCTTGGCTGCTGGGACCTCCATCCCTGATCTTATCACCAGTGTCATAGTGGCCCGGAAGGGGTTA
GGGGACATGGCTGTGTCCAGCTCTGTTGGAAGCAACATTTTTGACATCACTGTAGGGCTCCCACTGCCCT
GGCTCCTGTACACCGTCATTCACAGATTCCAGCCAGTGGCTGTCAGCAGCAATGGCCTTTTCTGTGCCAT
CGTCCTTCTCTTCATCATGCTGCTCTTCGTCATCCTCTCTATCGCCCTCTGCAAGTGGCGAATGAACAAA
ATCCTGGGCTTCATCATGTTTGGCCTCTACTTTGTGTTCCTGGTGGTGAGCGTTCTCCTAGAAGACAGAA
TTCTTACATGCCCCGTCTCCATCTAG

Translation (661 aa):
MDLQQSTTITSLEKWCLDESLSGCRRHYSVKKKLKLIRVLGLFMGLVAISTVSFSISAFSETDTQSTGEA
SVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLSKEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVI
GMIYMFIALAIVCDEFFVPSLTVITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVG
SAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFM
KFNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNSLMRNSIFQLM
IHTLDPLAEELGSYGKLKYYDTMTEEGRFREKASILHKIAKKKCHVDENERQNGAANHVEKIELPNSTST
DVEMTPSSDASEPVQNGNLSHNIEGAEAQTADEEEDQPLSLAWPSETRKQVTFLIVFPIVFPLWITLPDV
RKPSSRKFFPITFFGSITWIAVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGL
GDMAVSSSVGSNIFDITVGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNK
ILGFIMFGLYFVFLVVSVLLEDRILTCPVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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