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Report for CCDS65254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65254.1 Public Homo sapiens X SLC35A2 24 110 108 CCDS HistoryNCBI Gene:7355Re-query CCDS DB by CCDS ID:65254.1Re-query CCDS DB by GeneID:7355See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 65254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452555.7 ENSP00000416002.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452555.7Link to Ensembl Protein Viewer:ENSP00000416002.2Re-query CCDS DB by Nucleotide ID:ENST00000452555Re-query CCDS DB by Protein ID:ENSP00000416002
Original member Current member NCBI NM_001282651.2 NP_001269580.1 Accepted alive Link to Nucleotide Sequence:NM_001282651.2Link to Protein Sequence:NP_001269580.1Re-query CCDS DB by Nucleotide ID:NM_001282651Re-query CCDS DB by Protein ID:NP_001269580Link to BLAST:NP_001269580.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269580.1 421 P78381-4 421 100% 0 0

Chromosomal Locations for CCDS 65254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48904727 48905482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48906392 48906543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48909814 48909996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48910234 48910317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48911546 48911636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCAGCGGTTGGGGCTGGTGGTTCCACCGCGGCGCCCGGGCCAGGGGCGGTTTCCGCGGGTGCATTGG
AG
CCGGGGACCGCCAGTGCGGAGTTGCTTCTCACTTGGGAGGAAGCCGAGGCGCGTGGCCAGGGTTTGCC
T
CAGCCATTACCTGACACCTCAGTAAGGATTCCAGCTCACAGGCGCCTGAAGTACATATCCCTAGCTGTG
CTG
GTGGTCCAGAATGCCTCCCTCATCCTCAGCATCCGCTACGCCCGCACGTTGCCAGGGGACCGCTTCT
TT
GCCACCACTGCTGTGGTCATGGCGGAAGTGCTCAAAGGTCTCACCTGCCTGCTGCTGCTCTTCGCACA
G
AAGAGGGGTAACGTGAAGCACCTGGTTCTCTTCCTCCATGAGGCTGTCCTGGTGCAGTATGTGGACACG
CTC
AAGCTCGCAGTGCCCTCTCTCATCTACACCTTGCAGAATAACCTCCAGTATGTTGCCATCTCTAACC
TA
CCAGCTGCCACTTTCCAGGTGACATACCAGCTGAAGATCCTGACCACAGCGCTGTTCTCCGTGCTCAT
G
CTGAATCGCAGCCTTTCCCGGCTGCAGTGGGCCTCCCTGCTGCTCCTCTTCACTGGCGTCGCCATTGTC
CAG
GCACAGCAAGCCGGTGGGGGAGGCCCACGGCCACTGGATCAGAACCCTGGGGCAGGCCTGGCAGCCG
TC
GTGGCCTCCTGTCTCTCCTCCGGCTTCGCAGGTGTCTACTTTGAGAAGATCCTCAAAGGCAGCTCAGG
C
TCCGTGTGGCTGCGCAACCTGCAACTGGGCCTCTTCGGCACAGCACTGGGCCTGGTGGGGCTCTGGTGG
GCT
GAGGGTACCGCCGTGGCCACCCGTGGTTTCTTTTTTGGGTACACACCTGCTGTCTGGGGCGTGGTGC
TC
AACCAGGCCTTCGGCGGGCTACTGGTGGCTGTGGTTGTCAAGTACGCTGACAATATCCTCAAGGGCTT
T
GCCACCTCCCTGTCCATTGTGCTGTCCACTGTTGCCTCCATTCGCCTCTTTGGCTTCCACGTGGACCCA
TTA
TTTGCCCTTGGCGCTGGACTCGTCATTGGTGCTGTCTACCTCTACAGCCTTCCCCGAGGTGCAGCCA
AA
GCCATAGCCTCTGCCTCTGCCTCCGCCTCCGGGCCCTGCGTTCACCAGCAGCCTCCCGGGCAGCCACC
A
CCACCGCAGCTGTCTTCCCACCGTGGAGACCTCATCACGGAGCCCTTTCTGCCAAAGTCAGTGCTGGTG
AAG
TGA


Translation (421 aa):
MAAVGAGGSTAAPGPGAVSAGALEPGTASAELLLTWEEAEARGQGLPQPLPDTSVRIPAHRRLKYISLAV
L
VVQNASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKR
GNVKHLVLFLHEAVLVQYVDT
L
KLAVPSLIYTLQNNLQYVAISNLPAATFQ
VTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIV
Q
AQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTALGLVGLWW
A
EGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVDP
L
FALGAGLVIGAVYLYSLPRGAAKAIASASASASGPCVHQQPPGQPPPPQLSSHRGDLITEPFLPKSVLV
K




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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