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Report for CCDS67002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
67002.1 Public Homo sapiens 16 CDIPT 24 110 108 CCDS HistoryNCBI Gene:10423Re-query CCDS DB by CCDS ID:67002.1Re-query CCDS DB by GeneID:10423See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 67002.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000566113.5 ENSP00000457340.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000566113.5Link to Ensembl Protein Viewer:ENSP00000457340.1Re-query CCDS DB by Nucleotide ID:ENST00000566113Re-query CCDS DB by Protein ID:ENSP00000457340
Original member Current member NCBI NM_001286585.2 NP_001273514.1 Accepted alive Link to Nucleotide Sequence:NM_001286585.2Link to Protein Sequence:NP_001273514.1Re-query CCDS DB by Nucleotide ID:NM_001286585Re-query CCDS DB by Protein ID:NP_001273514Link to BLAST:NP_001273514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273514.1 168 O14735-3 168 100% 0 0

Chromosomal Locations for CCDS 67002.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29859189 29859334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29859442 29859523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29860581 29860662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29861106 29861259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29862815 29862857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGCCAGACGAAAATATCTTCCTGTTCGTGCCCAACCTCATCGGAACCCGGTTTGGGGCCATGCTGGACA
TGCTGACGGACCGCTGCTCCACCATGTGCCTGTTGGTCAACCTGGCCCTGCTGTACCCTGGAGCCACGCT
GTTCTTCCAAATCAGCATGAGTTTGGATGTGGCCAGTCACTGGCTGCACCTCCACAGTTCTGTGGTCCGA
GGCAGTGAGAGTCACAAGATGATCGACTTGTCCGGGAATCCGGTGCTTCGGATCTACTACACCTCGAGGC
CTGCTCTGTTCACCTTGTGTGCTGGGAATGAGCTCTTCTACTGCCTCCTCTACCTGTTCCATTTCTCTGA
GGGACCTTTAGTTGGCTCTGTGGGACTGTTCCGGATGGGCCTCTGGGTCACTGCCCCCATCGCCTTGCTG
AAGTCGCTCATCAGCGTCATCCACCTGATCACGGCCGCCCGCAACATGGCTGCCCTGGACGCAGCAGACC
GCGCCAAGAAGAAGTGA

Translation (168 aa):
MPDENIFLFVPNLIGTRFGAMLDMLTDRCSTMCLLVNLALLYPGATLFFQISMSLDVASHWLHLHSSVVR
GSESHKMIDLSGNPVLRIYYTSRPALFTLCAGNELFYCLLYLFHFSEGPLVGSVGLFRMGLWVTAPIALL
KSLISVIHLITAARNMAALDAADRAKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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