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Report for CCDS67107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
67107.1 Public Homo sapiens 17 SLC43A2 24 110 108 CCDS HistoryNCBI Gene:124935Re-query CCDS DB by CCDS ID:67107.1Re-query CCDS DB by GeneID:124935See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 67107.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412517.3 ENSP00000408284.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412517.3Link to Ensembl Protein Viewer:ENSP00000408284.3Re-query CCDS DB by Nucleotide ID:ENST00000412517Re-query CCDS DB by Protein ID:ENSP00000408284
Original member Current member NCBI NM_001284499.1 NP_001271428.1 Accepted alive Link to Nucleotide Sequence:NM_001284499.1Link to Protein Sequence:NP_001271428.1Re-query CCDS DB by Nucleotide ID:NM_001284499Re-query CCDS DB by Protein ID:NP_001271428Link to BLAST:NP_001271428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271428.1 432 Q8N370-4 432 100% 0 0

Chromosomal Locations for CCDS 67107.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 1575604 1575765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1576597 1576720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1578250 1578323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1583204 1583336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1585913 1586051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1590802 1590948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1591269 1591471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1591566 1591699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1593187 1593279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1604740 1604829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGACCTACGGGAGTCCACAGGCAAATGCAAGCCCATCCGATGCTGTGGCGCTGGACCATGGGGAGGTCA
GCCGAAGGCAACAGCAGGAGCTGCCCAACATGTTCGGCGACCTTCGGTCCACGTTTATTGCCTTGATGAT
TGGGTCCTACGCCTCCTCGGCAGTCACCTTTCCAGGAATCAAGCTCATCTATGATGCTGGTGTCTCCTTC
ATCGTCGTCCTCGTGGTCTGGGCCGGCTGCTCCGGGCTGGTTTTCCTCAACTGCTTCTTTAACTGGCCCC
TTGAGCCCTTCCCGGGGCCGGAGGACATGGACTACTCGGTGAAGATCAAGTTCAGCTGGCTGGGCTTTGA
CCACAAGATCACAGGGAAGCAGTTCTACAAGCAGGTGACCACGGTGGGCCGGCGCCTGAGTGTGGGCAGC
TCCATGAGGAGTGCCAAGGAGCAGGTGGCGCTGCAGGAGGGCCACAAGCTGTGCCTGTCCACCGTCGACC
TGGAGGTGAAGTGCCAGCCGGATGCCGCAGTGGCCCCCTCCTTCATGCACAGCGTGTTCAGCCCCATCCT
GCTGCTCAGCCTGGTCACCATGTGCGTCACGCAGCTGCGGCTCATCTTCTACATGGGGGCTATGAACAAC
ATCCTCAAGTTCCTGGTCAGCGGCGACCAGAAGACAGTTGGCCTCTACACCTCCATCTTCGGCGTGCTCC
AGCTGCTGTGCCTGCTGACGGCCCCCGTCATTGGCTACATCATGGACTGGAGGCTGAAGGAGTGTGAAGA
CGCCTCCGAGGAGCCCGAGGAGAAAGACGCCAACCAAGGCGAGAAGAAAAAGAAGAAGCGGGACCGGCAG
ATCCAGAAGATCACTAATGCCATGCGGGCCTTCGCCTTCACCAACCTGCTGCTCGTGGGCTTTGGGGTGA
CCTGCCTCATTCCCAACCTGCCTCTCCAGATCCTCTCCTTCATCCTGCACACAATCGTGCGAGGATTCAT
CCACTCCGCTGTCGGGGGCCTGTACGCTGCCGTGTACCCCTCCACCCAGTTCGGCAGCCTCACGGGACTG
CAGTCTCTGATCAGCGCGCTCTTCGCCCTTCTGCAGCAGCCGCTGTTTCTGGCCATGATGGGTCCTCTCC
AGGGAGACCCTCTGTGGGTGAACGTGGGGCTGCTCCTTCTCAGCCTGCTGGGCTTCTGCCTCCCGCTCTA
CCTGATCTGCTACCGGCGCCAGCTGGAGCGGCAGCTGCAGCAGAGGCAGGAGGATGACAAACTCTTCCTC
AAAATCAACGGCTCGTCCAACCAGGAGGCCTTCGTGTAG

Translation (432 aa):
MTYGSPQANASPSDAVALDHGEVSRRQQQELPNMFGDLRSTFIALMIGSYASSAVTFPGIKLIYDAGVSF
IVVLVVWAGCSGLVFLNCFFNWPLEPFPGPEDMDYSVKIKFSWLGFDHKITGKQFYKQVTTVGRRLSVGS
SMRSAKEQVALQEGHKLCLSTVDLEVKCQPDAAVAPSFMHSVFSPILLLSLVTMCVTQLRLIFYMGAMNN
ILKFLVSGDQKTVGLYTSIFGVLQLLCLLTAPVIGYIMDWRLKECEDASEEPEEKDANQGEKKKKKRDRQ
IQKITNAMRAFAFTNLLLVGFGVTCLIPNLPLQILSFILHTIVRGFIHSAVGGLYAAVYPSTQFGSLTGL
QSLISALFALLQQPLFLAMMGPLQGDPLWVNVGLLLLSLLGFCLPLYLICYRRQLERQLQQRQEDDKLFL
KINGSSNQEAFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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