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Report for CCDS6717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6717.1 Public Homo sapiens 9 SLC35D2 24 110 108 CCDS HistoryNCBI Gene:11046Re-query CCDS DB by CCDS ID:6717.1Re-query CCDS DB by GeneID:11046See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6717.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253270.13 ENSP00000253270.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253270.13Link to Ensembl Protein Viewer:ENSP00000253270.7Re-query CCDS DB by Nucleotide ID:ENST00000253270Re-query CCDS DB by Protein ID:ENSP00000253270
Original member Current member NCBI NM_007001.3 NP_008932.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007001.3Link to Protein Sequence:NP_008932.2Re-query CCDS DB by Nucleotide ID:NM_007001Re-query CCDS DB by Protein ID:NP_008932Link to BLAST:NP_008932.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008932.2 337 Q76EJ3-1 337 100% 0 0

Chromosomal Locations for CCDS 6717.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96321242 96321341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96321998 96322080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96324091 96324169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96336717 96336784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96343904 96343996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96345299 96345401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96351103 96351171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96352038 96352109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96360154 96360221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96364464 96364550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96368272 96368305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96383477 96383634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGACGGCCGGCGGCCAGGCCGAGGCCGAGGGCGCTGGCGGGGAGCCCGGCGCGGCGCGGCTGCCCTCGC
GGGTGGCCCGGCTGCTGTCGGCGCTCTTCTACGGGACCTGCTCCTTCCTCATCGTGCTTGTCAACAAGGC
GCTGCTGACCACCTACGGTTTCCCGTCACCAATTTTCCTTGGAATTGGACAGATGGCAGCCACCATAATG
ATACTATATGTGTCCAAGCTAAACAAAATCATTCACTTCCCTGATTTTGATAAGAAAATTCCTGTAAAGC
TGTTTCCTCTGCCTCTCCTCTACGTTGGAAACCACATAAGTGGATTATCAAGCACAAGTAAATTAAGCCT
ACCGATGTTCACCGTGCTCAGGAAATTCACCATTCCACTTACCTTACTTCTGGAAACCATCATACTTGGG
AAGCAGTATTCACTCAACATCATCCTCAGTGTCTTTGCCATTATTCTCGGGGCTTTCATAGCAGCTGGGT
CTGACCTTGCTTTTAACTTAGAAGGCTATATTTTTGTATTCCTGAATGATATCTTCACAGCAGCAAATGG
AGTTTATACCAAACAGAAAATGGACCCAAAGGAGCTAGGGAAATACGGAGTACTTTTCTACAATGCCTGC
TTCATGATTATCCCAACTCTTATTATTAGTGTCTCCACTGGAGACCTGCAACAGGCTACTGAATTCAACC
AATGGAAGAATGTTGTGTTTATCCTACAGTTTCTTCTTTCCTGTTTTTTGGGGTTTCTGCTGATGTACTC
CACGGTTCTGTGCAGCTATTACAATTCAGCCCTGACGACAGCAGTGGTTGGAGCCATCAAGAATGTATCC
GTTGCCTACATTGGGATATTAATCGGTGGAGACTACATTTTCTCTTTGTTAAACTTTGTAGGGTTAAATA
TTTGCATGGCAGGGGGCTTGAGATATTCCTTTTTAACACTGAGCAGCCAGTTAAAACCTAAACCTGTGGG
TGAAGAAAACATCTGTTTGGATTTGAAGAGCTAA

Translation (337 aa):
MTAGGQAEAEGAGGEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFLGIGQMAATIM
ILYVSKLNKIIHFPDFDKKIPVKLFPLPLLYVGNHISGLSSTSKLSLPMFTVLRKFTIPLTLLLETIILG
KQYSLNIILSVFAIILGAFIAAGSDLAFNLEGYIFVFLNDIFTAANGVYTKQKMDPKELGKYGVLFYNAC
FMIIPTLIISVSTGDLQQATEFNQWKNVVFILQFLLSCFLGFLLMYSTVLCSYYNSALTTAVVGAIKNVS
VAYIGILIGGDYIFSLLNFVGLNICMAGGLRYSFLTLSSQLKPKPVGEENICLDLKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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