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Report for CCDS672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
672.1 Public Homo sapiens 1 ST6GALNAC3 24 110 108 CCDS HistoryNCBI Gene:256435Re-query CCDS DB by CCDS ID:672.1Re-query CCDS DB by GeneID:256435See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 672.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328299.4 ENSP00000329214.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328299.4Link to Ensembl Protein Viewer:ENSP00000329214.3Re-query CCDS DB by Nucleotide ID:ENST00000328299Re-query CCDS DB by Protein ID:ENSP00000329214
Original member Current member NCBI NM_152996.4 NP_694541.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152996.4Link to Protein Sequence:NP_694541.2Re-query CCDS DB by Nucleotide ID:NM_152996Re-query CCDS DB by Protein ID:NP_694541Link to BLAST:NP_694541.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694541.2 305 Q8NDV1-1 305 100% 0 0

Chromosomal Locations for CCDS 672.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 76074867 76074884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 76313805 76313999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 76412008 76412417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 76627452 76627559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 76628620 76628806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGCCTGCATCCTGAAGAGAAAGTCTGTGATTGCTGTGAGCTTCATAGCAGCGTTCCTTTTCCTGCTGG
TT
GTGCGTCTTGTAAATGAAGTGAATTTCCCATTGCTACTAAACTGCTTTGGACAACCTGGTACAAAGTG
G
ATACCATTCTCCTACACATACAGGCGGCCCCTTCGAACTCACTATGGATACATAAATGTGAAGACACAA
GAG
CCTTTGCAACTGGACTGTGACCTTTGTGCCATAGTGTCAAACTCAGGTCAGATGGTTGGCCAGAAGG
TG
GGAAATGAGATAGATCGATCCTCCTGCATTTGGAGAATGAACAATGCCCCCACCAAAGGTTATGAAGA
A
GATGTCGGCCGCATGACCATGATTCGAGTTGTGTCCCATACCAGCGTTCCTCTTTTGCTAAAAAACCCT
GAT
TATTTTTTCAAGGAAGCGAATACTACTATTTATGTTATTTGGGGACCTTTCCGCAATATGAGGAAAG
AT
GGCAATGGCATCGTTTACAACATGTTGAAAAAGACAGTTGGTATCTATCCGAATGCCCAAATATACGT
G
ACCACAGAGAAGCGCATGAGTTACTGTGATGGAGTTTTTAAGAAGGAAACTGGGAAGGACAGAGTCCAG
TCT
GGCTCATATCTCAGCACAGGGTGGTTTACCTTCCTTCTGGCCATGGACGCCTGTTATGGCATTCACG
TC
TACGGGATGATAAATGACACCTACTGCAAGACAGAAGGGTATAGAAAAGTCCCCTACCATTATTATGA
A
CAAGGAAGAGATGAGTGTGATGAATATTTTCTTCATGAACATGCCCCATATGGGGGTCATAGGTTTATC
ACT
GAAAAGAAAGTGTTTGCTAAATGGGCCAAGAAGCACAGGATAATATTTACACATCCAAACTGGACAT
TG
TCTTGA


Translation (305 aa):
MACILKRKSVIAVSFIAAFLFLLVVRLVNEVNFPLLLNCFGQPGTKWIPFSYTYRRPLRTHYGYINVKTQ
E
PLQLDCDLCAIVSNSGQMVGQKVGNEIDRSSCIWRMNNAPTKGYEEDVGRMTMIRVVSHTSVPLLLKNP
D
YFFKEANTTIYVIWGPFRNMRKDGNGIVYNMLKKTVGIYPNAQIYVTTEKRMSYCDGVFKKETGKD
RVQ
S
GSYLSTGWFTFLLAMDACYGIHVYGMINDTYC
KTEGYRKVPYHYYEQGRDECDEYFLHEHAPYGGHRFI
T
EKKVFAKWAKKHRIIFTHPNWTLS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser