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Report for CCDS69943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69943.1 Public Mus musculus 1 Chit1 23 108 98 CCDS HistoryNCBI Gene:71884Re-query CCDS DB by CCDS ID:69943.1Re-query CCDS DB by GeneID:71884See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160060.7 ENSMUSP00000124331.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160060.7Link to Ensembl Protein Viewer:ENSMUSP00000124331.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160060Re-query CCDS DB by Protein ID:ENSMUSP00000124331
Original member Current member NCBI NM_001284524.1 NP_001271453.1 Accepted alive Link to Nucleotide Sequence:NM_001284524.1Link to Protein Sequence:NP_001271453.1Re-query CCDS DB by Nucleotide ID:NM_001284524Re-query CCDS DB by Protein ID:NP_001271453Link to BLAST:NP_001271453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271453.1 396 Q9D7Q1-2 396 100% 0 0

Chromosomal Locations for CCDS 69943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134138748 134138772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134140260 134140289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134143240 134143441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134144011 134144067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134145252 134145417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134145591 134145715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134146562 134146685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134148336 134148521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134149376 134149483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134151212 134151379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGTGCAGTCCCTGGCCTGGGCAGGTGTGATGACTCTGCTGATGGTCCAGTGGGGCTCTGCTGCAAAAC
TGGTCTGCTACCTCACCAACTGGTCCCAGTACCGGACGGAGGCAGTTCGGTTCTTTCCCAGGGATGTGGA
TCCCAACCTGTGTACCCACGTCATCTTTGCTTTTGCTGGAATGGACAACCATCAGCTCAGCACTGTGGAG
CACAATGACGAACTTCTCTACCAGGAGCTGAACAGCCTAAAGACTAAGAACCCCAAGCTCAAGACCCTGT
TAGCCGTTGGAGGCTGGACCTTTGGTACCCAGAAGTTCACAGACATGGTGGCCACCGCCAGCAACCGGCA
GACCTTTGTGAAGTCAGCCCTAAGTTTCCTGCGCACTCAAGGTTTTGATGGCCTTGACCTTGACTGGGAG
TTCCCAGGTGGACGTGGGAGCCCCACAGTAGACAAAGAGAGATTCACAGCCCTGATACAGGACTTGGCCA
AAGCCTTCCAGGAGGAAGCCCAGTCCTCAGGGAAGGAACGCCTCCTTCTGACTGCAGCTGTACCGAGTGA
TCGAGGCCTGGTGGATGCTGGCTACGAGGTGGACAAGATTGCCCAGAGCTTGGATTTCATCAACCTTATG
GCCTACGACTTCCACAGCTCCTTGGAAAAGACCACAGGGCATAACAGCCCCCTCTACAAAAGGCAAGGAG
AAAGTGGGGCAGCCGCTGAGCAAAACGTGGATGCTGCTGTGACGCTCTGGCTGCAGAAGGGGACCCCAGC
CAGCAAACTGATCCTTGGCATGCCTACCTATGGACGCTCTTTCACCTTGGCCTCCTCGTCAGACAATGGA
GTTGGGGCCCCAGCCACAGGGCCTGGTGCCCCAGGCCCCTATACGAAGGACAAAGGGGTCCTGGCTTACT
ATGAGGCCTGCTCCTGGAAGGAAAGACACAGAATCGAGGACCAGAAGGTGCCTTACGCCTTCCAGGACAA
CCAGTGGGTGAGCTTTGACGACGTGGAAAGCTTCAAAGCCAAGGCAAAGCTGATGGGGTCTACCCCAACC
CTGGAGACGAGTCCACTTACTACAACTGTGGAGGAGGGCGGCTGTTCCAGCAGAGCTGTCCTCCAGGCCT
GGTGTTTAGAGCCTCTTGCAAATGTTGTACCTGGAGCTAAGTTCCTGGAACCCCATCCAACTCCAGTCTG
A

Translation (396 aa):
MVQSLAWAGVMTLLMVQWGSAAKLVCYLTNWSQYRTEAVRFFPRDVDPNLCTHVIFAFAGMDNHQLSTVE
HNDELLYQELNSLKTKNPKLKTLLAVGGWTFGTQKFTDMVATASNRQTFVKSALSFLRTQGFDGLDLDWE
FPGGRGSPTVDKERFTALIQDLAKAFQEEAQSSGKERLLLTAAVPSDRGLVDAGYEVDKIAQSLDFINLM
AYDFHSSLEKTTGHNSPLYKRQGESGAAAEQNVDAAVTLWLQKGTPASKLILGMPTYGRSFTLASSSDNG
VGAPATGPGAPGPYTKDKGVLAYYEACSWKERHRIEDQKVPYAFQDNQWVSFDDVESFKAKAKLMGSTPT
LETSPLTTTVEEGGCSSRAVLQAWCLEPLANVVPGAKFLEPHPTPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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