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Report for CCDS69968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69968.1 Public Mus musculus 1 Slc19a2 23 108 98 CCDS HistoryNCBI Gene:116914Re-query CCDS DB by CCDS ID:69968.1Re-query CCDS DB by GeneID:116914See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159230.7 ENSMUSP00000123870.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159230.7Link to Ensembl Protein Viewer:ENSMUSP00000123870.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159230Re-query CCDS DB by Protein ID:ENSMUSP00000123870
Original member Current member NCBI NM_001276455.1 NP_001263384.1 Accepted alive Link to Nucleotide Sequence:NM_001276455.1Link to Protein Sequence:NP_001263384.1Re-query CCDS DB by Nucleotide ID:NM_001276455Re-query CCDS DB by Protein ID:NP_001263384Link to BLAST:NP_001263384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263384.1 460 Q9EQN9-2 460 100% 0 0

Chromosomal Locations for CCDS 69968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 164249253 164249456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164256747 164257235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164260792 164261017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164262047 164262239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164262620 164262761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164263390 164263518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGACGTGCCAGCCAGGGTGTCCAGACGAGCGGCGGCGGCGGCGGCCAGGATGCTTCTGCGTACTGCCC
GCGTCCCTCGCGAGTGCTGGTTCCTGCCGACCGCGCTGCTCTGCGCCTACGGCTTCTTCGCAAACCTCCG
GCCGTCGGAGCCGTTCCTCACGCCCTACCTTCTGGGACCCGACAAGAACTTGACCGAGAGACAGGTCTAC
AATGAAATTTATCCGGTGTGGACGTACTCTTACCTGCTGCTGCTGTTTCCCGTGTTCCTTGCCACAGACT
ACCTCCGGTACAAGCCTGTCATCCTGCTGCAGGGACTCAGCCTGATTGTGACGTGGTTCATGCTGCTCTA
TGCCCAGGGACTGCTGGCCATTCAGTTCTTGGAATTCTTCTACGGCATCGCCACAGCCACCGAAATCGCC
TACTACTCCTATATCTATACTGTGGTGGACCTGGGCATGTACCAGAAAGTCACAAGCTACTGTAGAAGTG
CCACCTTGGTGGGCTTTACAGTGGGCTCCGTCCTAGGGCAGATCCTCGTCTCCGTGGTGGGCTGGTCACT
GTTCAGCTTGAACGTCATCTCCCTCACCTGTGTTTCTGTGGCTTTTGCTGTGGCCTGGTTTCTGCCTATG
CCACAGAAGAGCCTCTTCTTTCACCACATTCCTTCCTCCTGTCATGGAGTGAACGGCCTCAAGGAGGAGC
CCAAGCCAGACCGGCTGCGGGTGTTCAGAGTCCTGTGGAATGACTTCCTGATGTGTTATTCCTCCCGCCC
TCTGCTCTGCTGGTCCGTGTGGTGGGCCCTGTCCACCTGCGGCTATTTCCAAGTGGTGAACTACGCGCAG
GGATTGTGGGAGAAGGTGATGCCTTCTCAGAATGCTGACATCTACAATGGCGGTGTGGAGGCCGTTTCAA
CCTTGCTGGGTGCTAGTGCTGTGTTTGCAGTTGGCTATATAAAGCTATCTTGGTCAACTTGGGGAGAAAT
GACGTTGTTCCTGTGTTCTCTCCTGATTGCTGCTGCAGTGTATGTCATGGACACTGTGCAGAGCATCTGG
GTGTGCTATGCATCCTATGTTGTCTTCAGAATCATCTACATGGTACTCATCACCATAGCAACTTTCCAGA
TTGCTGCGAACCTCAGCATGGAACGTTACGCCCTTGTGTTCGGCGTGAACACCTTCATTGCCCTGGCATT
GCAGACTCTGCTCACTCTGATTGTCGTGGATGCCAGGGGCCTTGGCTTATGTATCACCACTCAGTTCCTG
ATTTACGCCAGTTACTTCGCAGCCATCTCTGTGGTTTTCCTGGCGAATGGCATAGTCAGTATTATAAAGA
AATGCAGAAAGCAGGAAGATCCCAGCTCCAGCCCCCAAGCCTCCACGTCCTAA

Translation (460 aa):
MDVPARVSRRAAAAAARMLLRTARVPRECWFLPTALLCAYGFFANLRPSEPFLTPYLLGPDKNLTERQVY
NEIYPVWTYSYLLLLFPVFLATDYLRYKPVILLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIA
YYSYIYTVVDLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVVGWSLFSLNVISLTCVSVAFAVAWFLPM
PQKSLFFHHIPSSCHGVNGLKEEPKPDRLRVFRVLWNDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYAQ
GLWEKVMPSQNADIYNGGVEAVSTLLGASAVFAVGYIKLSWSTWGEMTLFLCSLLIAAAVYVMDTVQSIW
VCYASYVVFRIIYMVLITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDARGLGLCITTQFL
IYASYFAAISVVFLANGIVSIIKKCRKQEDPSSSPQASTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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