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Report for CCDS71117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71117.1 Public Mus musculus 2 Plcb2 23 108 98 CCDS HistoryNCBI Gene:18796Re-query CCDS DB by CCDS ID:71117.1Re-query CCDS DB by GeneID:18796See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159756.1 ENSMUSP00000124364.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159756.1Link to Ensembl Protein Viewer:ENSMUSP00000124364.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159756Re-query CCDS DB by Protein ID:ENSMUSP00000124364
Original member Current member NCBI NM_001290790.1 NP_001277719.1 Accepted alive Link to Nucleotide Sequence:NM_001290790.1Link to Protein Sequence:NP_001277719.1Re-query CCDS DB by Nucleotide ID:NM_001290790Re-query CCDS DB by Protein ID:NP_001277719Link to BLAST:NP_001277719.1

Chromosomal Locations for CCDS 71117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118708999 118709202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118709538 118709624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118710203 118710260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118710727 118710822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118710921 118710997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118711093 118711255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118711336 118711546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118711682 118711729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118711931 118712003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118712129 118712223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118712367 118712471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118713129 118713228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118713735 118713899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118714624 118714778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118715363 118715487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118715598 118715682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118717027 118717123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118717212 118717327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118717395 118717557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118718190 118718274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118718510 118718592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118718794 118718951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118719114 118719260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118719355 118719521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118719660 118719760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118723128 118723203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118723305 118723358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118723456 118723535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118723668 118723808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118725017 118725094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118728238 118728321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3477 nt):
ATGTCTTTGCTCAACCCTGTTCTATTGCCCCCTAACGTGAAGGCATATCTGAGCCAAGGGGAGCGCTTCA
TCAAGTGGGACGATGAAACTTCAATAGCCTCTCCTGTTATCCTCCGTGTGGATCCCAAGGGCTATTACTT
ATACTGGACATATCAAAATCAGAGCCAGAAACTCCGGGAGGTCTTCAACATGGACTTTCCAGACAACCAC
TTCCTGCTGAAAACACTCACAGTGGTGTCCGGCCCTGACATGGTGGACCTCACCTTCTACAACTTTGTCT
CTTACAAGGAGAACGTAGGCAAGGACTGGGCTGAGGACGTGCTAGCTCTCGCCAAACACCCGATGACAGT
CAATGCTCCTCGAAGCACATTCCTGGACAAGATCCTGGTGAAGCTTAAGATGCAGCTCAACCCTGAAGGG
AAGATTCCCGTGAAGAATTTTTTCCAGATGTTTCCTGCTGATCGAAAACGGGTGGAAGCTGCCCTCGGTG
CTTGTCACCTTGCAAAAGGCAAAAATGATGCTATCAACCCAGAGGACTTCCCAGAATCCGTGTACAAGAG
CTTCCTCATGAGCCTCTGTCCTCGGCCAGAAATCGACGAGATCTTCACTTCCTACCACTCTAAAGCTAAG
CCCTACATGACCAAGGAACACCTGACCAAATTCATCAATCAGAAGCAGCGAGACCCTCGACTCAACTCCT
TGCTGTTCCCACCAGCCCGGCCTGAGCAAGTTCAAGTGCTCATTGACAAGTACGAACCCAGCGGCATCAA
TGTGCAGAGGGGCCAGCTGTCACCAGAGGGGATGGTCTGGTTTCTCTGTGGACCAGAGAACAGTGTGCTG
GCCCACGATACACTGCTGATCCACCAAGACATGACACAACCACTGAATCACTATTTCATCAACTCCTCAC
ACAACACCTACCTGACAGCCGGCCAGTTCTCAGGCCTTTCCTCGGCTGAGATGTACCGCCAGGTGCTGCT
GTCTGGCTGCCGGTGTGTAGAGTTAGACTGTTGGAAGGGCAAGCCCCCTGACGAAGAGCCCATTATCACC
CACGGCTTCACCATGACCACAGATATCTTGTTCAAGGAAGCAATTGAAGCCATTGCAGAAAGTGCCTTTA
AGACCTCCCCGTATCCTGTCATCCTATCATTTGAAAACCATGTAGACTCACCCCGGCAACAGGCTAAGAT
GGCTGAGTACTGCAGGAGCATGTTTGGAGAGACCTTGCTCACAGATCCCCTGGAAAATTTCCCTCTGAAA
CCTGGCATCCCTCTGCCCAGCCCCGAGGACCTCCGGGGCAAGATCCTCATTAAGAATAAGAAGAACCAGT
TTTCTGGGCCAGCATCCCCCAGCAAGAAGCCTGGTGGGGTGGCTGAGGGCAGCCTCCCGTCTAGTGTCCC
TGTAGAAGAGGACACGGGGTGGACTGCTGAGGACCGGACTGAGGTGGAGGAGGAGGAGGTGGTGGAAGAG
GAGGAAGAGGAGGAGTCAGGAAACCTGGATGAAGAAGAAATTAAGAAGATGCAGTCGGATGAGGGCACAG
CAGGCCTGGAGGTGACAGCTTATGAGGAAATGTCCAGCCTTGTCAATTATATCCAGCCCACCAAGTTTAT
CTCCTTCGAGTTCTCTGCACAGAAGAACAGAAGTTACGTTGTCTCTTCCTTCACGGAGCTCAAGGCCTAC
GAGCTGCTCTCCAAGGCCTCCATGCAGTTTGTGGACTATAATAAACGCCAGATGAGCCGTGTGTACCCCA
AGGGCACACGCATGGACTCTTCCAACTACATGCCCCAGATGTTCTGGAATGCTGGATGTCAGATGGTTGC
CCTCAATTTCCAGACAATGGACCTGCCCATGCAGCAGAACATGGCACTGTTTGAGTTCAACGGGCAGAGT
GGCTACCTCCTAAAGCACGAGTTCATGCGCAGACTGGACAAGCAGTTCAACCCCTTCTCAGTGGACCGCA
TTGATGTGGTGGTAGCCACCACCCTTTCCATTACGATCATCTCTGGGCAGTTCCTGTCAGAGCGCAGTGT
ACGCACCTATGTGGAAGTGGAACTGTTTGGCCTCCCAGGGGACCCCAAGAGGCGGTATCGAACCAAGCTG
TCACCTACTGCTAACTCCATCAATCCTGTCTGGAAAGAGGAACCCTTTATCTTTGAGAAGATCTTGATGC
CTGAGCTGGCCTCCCTCAGGATAGCTGTGATGGAAGAAGGCAGCAAATTTCTTGGACACCGCATCATCCC
CATCAATGCCTTACATTCTGGATACCACCATCTGTGCCTGCGCAGTGAGAGCAACATGGCCCTTACCATG
CCAGCTCTCTTTGTCTTCCTGGAGATGAAGGACTACATACCTGACACCTGGGCAGATCTTACAGTAGCCC
TTGCCAACCCCATCAAGTACTTCAATGCCCAGGATAAGAAGTCCGTGAAGCTCAAAGGAGTGACAGGAAG
TCTGCCCGAGAAACTCTTCTCTGGGACACCTGTTGCCAGTCAGTCCAATGGGGCGCCAGTCTCGGCAGGC
AATGGGTCAACAGCGCCTGGGACCAAGGCCACGGGGGAAGAAGCTACGAAAGAAGTGACAGAGCCACAGA
CCGCCAGCTTGGAAGAGTTGCGGGAACTGAAGGGCGTGGTGAAACTGCAGCGAAGACATGAGAAGGAGCT
TCGAGAGTTGGAGCGCCGTGGAGCCCGGCGCTGGGAGGAACTGCTGCAGCGTGGCGCCGCACAGCTGGCG
GAGCTCCAGACCCAGGCAGCAGGCTGCAAGCTCCGCCCAGGCAAGGGCTCCCGCAAGAAGAGGACCCTGC
CCTGTGAGGAGACCGTCGTGGCGCCTAGCGAGCCCCACGACCGGGCGGACCCGCGCGTGCAGGAGCTGAA
GGACAGGCTGGAGCAGGAGCTGCAGCAGCAAGGCGAGGAGCAGTACCGCTCCGTCCTCAAGCGCAAGGAG
CAGCACGTGACCGAGCAAATCGCCAAGATGATGGAGCTGGCCAGAGAGAAACAGGCTGCTGAACTCAAGA
CCTTCAAGGAGACCTCAGAAACTGACACCAAAGAAATGAAGAAAAAACTGGAGGCCAAGAGGCTGGAACG
GATCCAAGCCATGACCAAGGTCACCACAGACAAGGTGGCCCAGGAGAGGCTCAAGAGAGAAATTAACAAC
TCCCACATCCAGGAAGTGGTCCAGGCTGTCAAGCAGATGACAGAGACCCTGGAGCGTCACCAGGAGAAGC
TGGAAGAGAGGCAGACAGCCTGCCTGGAGCAGATCCAGGCAATGGAAAAGCAGTTCCAGGAGAAGGCGCT
GGCAGAGTATGAGGCCAAGATGAAGGGCCTGGAGGCTGAAGTAAAGGAGTCGGTGCGGGCCTACTTCAAG
GACTGCTTCCCCACCGAAGCAGAAGACAAGCCTGAGAGGTCCTGTGAGGCCTCTGAGGAGTCGTGTCCAC
AGGAACCACTTGTGAGCAAGGCAGACACTCAGGAGAGCCGCCTCTGA

Translation (1158 aa):
MSLLNPVLLPPNVKAYLSQGERFIKWDDETSIASPVILRVDPKGYYLYWTYQNQSQKLREVFNMDFPDNH
FLLKTLTVVSGPDMVDLTFYNFVSYKENVGKDWAEDVLALAKHPMTVNAPRSTFLDKILVKLKMQLNPEG
KIPVKNFFQMFPADRKRVEAALGACHLAKGKNDAINPEDFPESVYKSFLMSLCPRPEIDEIFTSYHSKAK
PYMTKEHLTKFINQKQRDPRLNSLLFPPARPEQVQVLIDKYEPSGINVQRGQLSPEGMVWFLCGPENSVL
AHDTLLIHQDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIIT
HGFTMTTDILFKEAIEAIAESAFKTSPYPVILSFENHVDSPRQQAKMAEYCRSMFGETLLTDPLENFPLK
PGIPLPSPEDLRGKILIKNKKNQFSGPASPSKKPGGVAEGSLPSSVPVEEDTGWTAEDRTEVEEEEVVEE
EEEEESGNLDEEEIKKMQSDEGTAGLEVTAYEEMSSLVNYIQPTKFISFEFSAQKNRSYVVSSFTELKAY
ELLSKASMQFVDYNKRQMSRVYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMALFEFNGQS
GYLLKHEFMRRLDKQFNPFSVDRIDVVVATTLSITIISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKL
SPTANSINPVWKEEPFIFEKILMPELASLRIAVMEEGSKFLGHRIIPINALHSGYHHLCLRSESNMALTM
PALFVFLEMKDYIPDTWADLTVALANPIKYFNAQDKKSVKLKGVTGSLPEKLFSGTPVASQSNGAPVSAG
NGSTAPGTKATGEEATKEVTEPQTASLEELRELKGVVKLQRRHEKELRELERRGARRWEELLQRGAAQLA
ELQTQAAGCKLRPGKGSRKKRTLPCEETVVAPSEPHDRADPRVQELKDRLEQELQQQGEEQYRSVLKRKE
QHVTEQIAKMMELAREKQAAELKTFKETSETDTKEMKKKLEAKRLERIQAMTKVTTDKVAQERLKREINN
SHIQEVVQAVKQMTETLERHQEKLEERQTACLEQIQAMEKQFQEKALAEYEAKMKGLEAEVKESVRAYFK
DCFPTEAEDKPERSCEASEESCPQEPLVSKADTQESRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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