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Report for CCDS7121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7121.1 Public Homo sapiens 10 HACD1 24 110 108 CCDS HistoryNCBI Gene:9200Re-query CCDS DB by CCDS ID:7121.1Re-query CCDS DB by GeneID:9200See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7121.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361271.8 ENSP00000355308.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361271.8Link to Ensembl Protein Viewer:ENSP00000355308.3Re-query CCDS DB by Nucleotide ID:ENST00000361271Re-query CCDS DB by Protein ID:ENSP00000355308
Original member Current member NCBI NM_014241.4 NP_055056.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014241.4Link to Protein Sequence:NP_055056.3Re-query CCDS DB by Nucleotide ID:NM_014241Re-query CCDS DB by Protein ID:NP_055056Link to BLAST:NP_055056.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055056.3 288 B0YJ81-1 288 100% 0 0

Chromosomal Locations for CCDS 7121.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 17590364 17590446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17594205 17594383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17599290 17599411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17603560 17603648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17603726 17603744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17603930 17604047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17617083 17617339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGGGCGCCTGACGGAAGCGGCGGCAGCGGGCAGCGGCTCTCGGGCTGCAGGCTGGGCAGGGTCCCCTC
CCACGCTCCTGCCGCTGTCTCCCACGTCCCCCAGGTGCGCGGCCACCATGGCGTCCAGCGACGAGGACGG
CACCAACGGCGGCGCCTCGGAGGCCGGCGAGGACCGGGAGGCTCCCGGCGAGCGGAGGCGCCTGGGGGTC
TTGGCCACCGCCTGGCTCACCTTCTACGACATCGCCATGACCGCGGGGTGGTTGGTTCTAGCTATTGCCA
TGGTACGTTTTTATATGGAAAAAGGAACACACAGAGGTTTATATAAAAGTATTCAGAAGACACTTAAATT
TTTCCAGACATTTGCCTTGCTTGAGATAGTTCACTGTTTAATTGGAATTGTACCTACTTCTGTGATTGTG
ACTGGGGTCCAAGTGAGTTCAAGAATCTTTATGGTGTGGCTCATTACTCACAGTATAAAACCAATCCAGA
ATGAAGAGAGTGTGGTGCTTTTTCTGGTCGCGTGGACTGTGACAGAGATCACTCGCTATTCCTTCTACAC
ATTCAGCCTTCTTGACCACTTGCCATACTTCATTAAATGGGCCAGATATAATTTTTTTATCATCTTATAT
CCTGTTGGAGTTGCTGGTGAACTTCTTACAATATACGCTGCCTTGCCGCATGTGAAGAAAACAGGAATGT
TTTCAATAAGACTTCCTAACAAATACAATGTCTCTTTTGACTACTATTATTTTCTTCTTATAACCATGGC
ATCATATATACCTTTGTTTCCACAACTCTATTTTCATATGTTACGTCAAAGAAGAAAGGTGCTTCATGGA
GAGGTGATTGTAGAAAAGGATGATTAA

Translation (288 aa):
MGRLTEAAAAGSGSRAAGWAGSPPTLLPLSPTSPRCAATMASSDEDGTNGGASEAGEDREAPGERRRLGV
LATAWLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVIV
TGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILY
PVGVAGELLTIYAALPHVKKTGMFSIRLPNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVLHG
EVIVEKDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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