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Report for CCDS71490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71490.1 Public Mus musculus 4 Pafah2 23 108 98 CCDS HistoryNCBI Gene:100163Re-query CCDS DB by CCDS ID:71490.1Re-query CCDS DB by GeneID:100163See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105870.7 ENSMUSP00000101496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105870.7Link to Ensembl Protein Viewer:ENSMUSP00000101496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105870Re-query CCDS DB by Protein ID:ENSMUSP00000101496
Original member Current member NCBI NM_001285872.1 NP_001272801.1 Accepted alive Link to Nucleotide Sequence:NM_001285872.1Link to Protein Sequence:NP_001272801.1Re-query CCDS DB by Nucleotide ID:NM_001285872Re-query CCDS DB by Protein ID:NP_001272801Link to BLAST:NP_001272801.1

Chromosomal Locations for CCDS 71490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134397557 134397586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134402970 134403104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134404093 134404243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134405006 134405102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134410904 134410972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134411767 134411905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134413342 134413455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134418042 134418133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134419869 134420039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134422378 134422532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134425473 134425567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGCCAGAAATAATAGAAGACCTCAGTTGGCCAGCAAATTCCCGAGCACCCGGCTTTGGTCCAGCTGGTG
ATGAGATGGGGGCCGGCCAGTCTGTGTGCTTCCCACCCATCTCGGGACCCCACCACATTGGCTGCACGGA
TGTGATGGAGGGTCACAGTCTTGAGGGGAGCCTCTTCCGACTCTTCTACCCTTGCCAAGCATCAGAGAAG
TGCGAGCAGCCCCTGTGGATTCCCCGCTACGAGTACAGCATGGGTCTGGCCGATTACCTGCAGTATAACA
AGCGCTGGGTGGGGTTGCTGTTCAACGTGGGTATCGGATCTTGTCGCTTGCCTGTTAGCTGGAACGGCCC
CTTTAAGGCAAAGGAGTCTGGATACCCTTTGATCATCTTGTCCCATGGTCTAGGAGGGTTCAGGGCGTCA
TACTCGGCCTTCTGCATGGAGCTGGCCTCTCGTGGCTTTGTGGTTGCTGCCGTAGAGCACAGGGACCAGT
CAGCTGCGGCCACCTACTTCTGCAAGCCGACCTCCCAGGAGAGCTCTCCCGCTGAATCTCTGGAGGAGGA
GTGGCTCCCCTTCCGTCGCATCAAGGAAGGGGAGAAGGAGTTCCACGTCAGGAATCCTCAGGTGCACCAG
CGGGTGAAAGAGTGTGTGCGAGTGCTGCGGATCCTTCAGGACGCCTCTGCTGGGAAGACTGTCGTCAATG
TCTTCCCAGGAGGACTGGATCTGATGACCTTGAAGGGCAGCATCGACAGGAACCGCGTAGCCGTGATGGG
TCACTCCTTTGGAGGAGCTACGGCTGTTCTTGCTTTGACCCAGGAGGTCCAGTTTCGGTGTGCTATAGCC
CTGGACGCTTGGATGTTCCCTCTGGAACGGGACTTTTACCCCAAAGCCCGGGGCCCTGTGTTCTTTATCA
ACGTCGAGAAATTCCAGACGGTAGAGAGCGTCAACTTGATGAAGAAGATCTGTGCCCAGCACGAGCAGTC
CAGGATCGTGACTGTCCTAGGCGCTGTTCATCGGAGTCAAACTGACTTTGCCTTTGTGACGGGCAACCTG
ATTGCTAAATTCTTTTCCAGTAACTCTCGTGGTACCTTGGACCCTTACGAAAGTCAGGAGGTCATGGTGA
GGGCCATCTTGGCCTTCCTGCAGAAGCACCTTGACCTGAAGGAAGACTACGATCAATGGAGCAGCTTCAT
CGAAGGCGTCGGACCATCGCTCATCCAAGGGGCCCCGCACTATCTGTCTAGTCTATAG

Translation (415 aa):
MPEIIEDLSWPANSRAPGFGPAGDEMGAGQSVCFPPISGPHHIGCTDVMEGHSLEGSLFRLFYPCQASEK
CEQPLWIPRYEYSMGLADYLQYNKRWVGLLFNVGIGSCRLPVSWNGPFKAKESGYPLIILSHGLGGFRAS
YSAFCMELASRGFVVAAVEHRDQSAAATYFCKPTSQESSPAESLEEEWLPFRRIKEGEKEFHVRNPQVHQ
RVKECVRVLRILQDASAGKTVVNVFPGGLDLMTLKGSIDRNRVAVMGHSFGGATAVLALTQEVQFRCAIA
LDAWMFPLERDFYPKARGPVFFINVEKFQTVESVNLMKKICAQHEQSRIVTVLGAVHRSQTDFAFVTGNL
IAKFFSSNSRGTLDPYESQEVMVRAILAFLQKHLDLKEDYDQWSSFIEGVGPSLIQGAPHYLSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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