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Report for CCDS71635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71635.1 Public Mus musculus 5 Idua 23 108 98 CCDS HistoryNCBI Gene:15932Re-query CCDS DB by CCDS ID:71635.1Re-query CCDS DB by GeneID:15932See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119212.7 ENSMUSP00000113190.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119212.7Link to Ensembl Protein Viewer:ENSMUSP00000113190.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119212Re-query CCDS DB by Protein ID:ENSMUSP00000113190
Original member Current member NCBI NM_172997.1 NP_766585.1 Accepted alive Link to Nucleotide Sequence:NM_172997.1Link to Protein Sequence:NP_766585.1Re-query CCDS DB by Nucleotide ID:NM_172997Re-query CCDS DB by Protein ID:NP_766585Link to BLAST:NP_766585.1

Chromosomal Locations for CCDS 71635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108669363 108669517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108679499 108679584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108679704 108679811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108680111 108680206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108680295 108680497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108680571 108680750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108680861 108681077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108681380 108681592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108681672 108681793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108681902 108682027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108682100 108682176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108683053 108683153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108683267 108683373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGCGACCCCCGCGTCCCTCCTCAGCTATGCTGACGTTTTTTGCTGCGTTCTTGGCCGCGCCCTTGGCGC
TGGCTGAGTCACCGTACCTGGTGCGTGTGGACGCAGCCCGCCCGCTGAGGCCTCTGTTGCCCTTCTGGAG
GAGCACCGGCTTCTGGAAGTCACCTGGGCAGGGACTTATGTACAACTTCACCCACTTGGATGCATTCTTG
GACCTTCTCATGGAGAACCAGCTTCTCCCTGGATTTGAGCTCATGGGCAGTCCTTCTGGGTACTTCACGG
ACTTTGATGACAAGCAGCAGGTGTTTGAATGGAAGGACCTGGTTTCTCTCTTGGCCAGGAGATACATTGG
TAGGTATGGGCTGACACACGTTTCCAAGTGGAACTTTGAGACTTGGAATGAACCAGACCACCATGACTTT
GACAACGTGTCCATGACCACACAAGGCTTCCTGAATTACTATGATGCCTGCTCTGAGGGGCTGCGCATTG
CCAGCCCCACTTTGAAGTTGGGTGGTCCTGGGGATTCCTTCCACCCCCTGCCAAGGTCACCAATGTGCTG
GAGCCTCCTGGGTCACTGTGCCAATGGAACCAACTTCTTCACTGGCGAGGTGGGCGTGCGTCTGGATTAC
ATCTCCCTGCACAAGAAGGGTGCAGGTAGCTCCATCGCCATCCTGGAGCAGGAGATGGCAGTTGTGGAGC
AGGTCCAGCAGCTCTTCCCTGAGTTCAAGGATACCCCTATTTACAATGACGAGGCAGACCCTCTGGTGGG
CTGGTCCCTGCCACAACCTTGGAGAGCTGATGTGACTTATGCGGCCCTGGTGGTGAAGGTCATTGCACAG
CACCAGAACCTGCTGTTTGCCAACAGCAGTTCCTCCATGCGCTATGTGCTCCTCAGCAATGACAATGCCT
TCCTGAGCTACCACCCGTACCCTTTCTCCCAGCGCACACTTACTGCTCGATTCCAGGTCAACAATACTCA
CCCACCCCACGTGCAGTTGCTGCGAAAGCCAGTACTCACAGTCATGGGGCTCATGGCCCTGTTGGATGGA
GAACAACTCTGGGCAGAGGTCTCAAAGGCTGGGGCTGTGTTGGACAGCAATCATACAGTGGGTGTCCTGG
CCAGCACCCATCACCCTGAAGGCTCCGCAGCGGCCTGGAGTACCACAGTCCTCATCTACACTAGTGATGA
CACCCACGCACACCCCAACCACAGTATCCCTGTGACTCTTCGCCTGCGTGGGGTACCTCCTGGCTTGGAT
CTTGTCTACATAGTACTCTACTTAGACAATCAACTCAGCAGCCCCTACAGTGCGTGGCAGCACATGGGCC
AGCCAGTCTTCCCCTCTGCAGAGCAGTTCCGACGTATGCGCATGGTGGAGGACCCCGTGGCTGAGGCACC
ACGCCCCTTTCCTGCTAGGGGCCGCCTGACCCTACACCGGAAGCTTCCGGTGCCATCACTCCTGCTGGTG
CATGTATGCACACGCCCCTTGAAGCCACCTGGGCAGGTCAGCCGGCTCCGTGCACTGCCCCTGACACATG
GACAGCTGATTTTGGTCTGGTCAGATGAGCGTGTGGGCTCCAAGTGCCTGTGGACATATGAGATCCAGTT
TTCCCAGAAAGGTGAAGAGTATGCCCCAATCAACAGGAGGCCGTCTACTTTTAACCTCTTTGTGTTCAGC
CCAGACACAGCTGTGGTCTCTGGCTCCTACCGAGTTCGAGCATTGGATTACTGGGCCCGGCCAGGCCCCT
TCTCCGACCCTGTGACTTACCTGGATGTCCCTGCCTCATGA

Translation (596 aa):
MRPPRPSSAMLTFFAAFLAAPLALAESPYLVRVDAARPLRPLLPFWRSTGFWKSPGQGLMYNFTHLDAFL
DLLMENQLLPGFELMGSPSGYFTDFDDKQQVFEWKDLVSLLARRYIGRYGLTHVSKWNFETWNEPDHHDF
DNVSMTTQGFLNYYDACSEGLRIASPTLKLGGPGDSFHPLPRSPMCWSLLGHCANGTNFFTGEVGVRLDY
ISLHKKGAGSSIAILEQEMAVVEQVQQLFPEFKDTPIYNDEADPLVGWSLPQPWRADVTYAALVVKVIAQ
HQNLLFANSSSSMRYVLLSNDNAFLSYHPYPFSQRTLTARFQVNNTHPPHVQLLRKPVLTVMGLMALLDG
EQLWAEVSKAGAVLDSNHTVGVLASTHHPEGSAAAWSTTVLIYTSDDTHAHPNHSIPVTLRLRGVPPGLD
LVYIVLYLDNQLSSPYSAWQHMGQPVFPSAEQFRRMRMVEDPVAEAPRPFPARGRLTLHRKLPVPSLLLV
HVCTRPLKPPGQVSRLRALPLTHGQLILVWSDERVGSKCLWTYEIQFSQKGEEYAPINRRPSTFNLFVFS
PDTAVVSGSYRVRALDYWARPGPFSDPVTYLDVPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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