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Report for CCDS71933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71933.1 Public Mus musculus 7 Gapdhs 23 108 98 CCDS HistoryNCBI Gene:14447Re-query CCDS DB by CCDS ID:71933.1Re-query CCDS DB by GeneID:14447See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182634.7 ENSMUSP00000138634.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182634.7Link to Ensembl Protein Viewer:ENSMUSP00000138634.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182634Re-query CCDS DB by Protein ID:ENSMUSP00000138634
Original member Current member NCBI NM_001290631.1 NP_001277560.1 Accepted alive Link to Nucleotide Sequence:NM_001290631.1Link to Protein Sequence:NP_001277560.1Re-query CCDS DB by Nucleotide ID:NM_001290631Re-query CCDS DB by Protein ID:NP_001277560Link to BLAST:NP_001277560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277560.1 440 Q64467 440 99.7727% 0 1

Chromosomal Locations for CCDS 71933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30729887 30729959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30730335 30730432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30731902 30732064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30732196 30732347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30732612 30732693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30733052 30733170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30733252 30733342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30736619 30736725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30736923 30737019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30737798 30738035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30743552 30743654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGTCGAGACGTGACGTGGTCCTTACCAATGTTACTGTTGTCCAGCTACGGCGGGACCGATGCCCATGCC
CATGCCCATGCCCATGTCCATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAGGTTGAGGATCCACC
ACCCACGGTTGAAGAACAGCCACCGCCACCGCCGCCGCCACCTCCACCTCCACCACCACCTCCTCCTCCT
CCTCCACCCCAGATAGAGCCAGACAAGTTTGAAGAGGCTCCCCCTCCCCCTCCCCCTCCTCCTCCTCCTC
CCCCTCCCCCTCCCCCACCACTCCAAAAGCCAGCTAGAGAGCTGACAGTGGGTATCAATGGATTTGGACG
CATTGGTCGTCTGGTGCTGCGAGTCTGCATGGAGAAGGGCATTAGGGTGGTAGCAGTGAATGACCCATTC
ATTGATCCAGAATACATGGTTTACATGTTCAAATATGACTCCACACATGGTAGATACAAAGGAAACGTGG
AACATAAGAATGGACAACTAGTTGTGGACAACCTTGAGATCAACACGTACCAGTGCAAAGACCCTAAAGA
AATCCCCTGGAGCTCTATAGGGAATCCCTACGTGGTGGAGTGTACAGGCGTCTATCTGTCCATCGAGGCA
GCTTCGGCACATATTTCATCTGGTGCCAGGCGTGTGGTGGTCACTGCACCCTCCCCCGATGCACCCATGT
TTGTCATGGGAGTGAACGAGAAGGACTATAACCCTGGCTCTATGACCATTGTCAGCAATGCATCCTGTAC
CACCAACTGCCTGGCTCCTCTCGCCAAGGTTATTCATGAAAACTTCGGGATCGTGGAAGGGCTAATGACC
ACAGTCCATTCCTACACAGCCACTCAGAAGACAGTGGATGGGCCATCAAAGAAGGACTGGCGAGGTGGCC
GCGGCGCTCACCAAAACATCATCCCATCGTCCACTGGGGCTGCCAAGGCTGTAGGCAAAGTCATCCCAGA
GCTCAAAGGGAAGCTAACAGGAATGGCATTCCGGGTGCCAACCCCAAACGTGTCAGTTGTGGACCTGACC
TGCCGCCTGGCCAAGCCTGCTTCTTACTCGGCTATCACGGAGGCTGTGAAAGCTGCAGCCAAGGGACCTT
TGGCTGGCATCCTTGCTTACACAGAGGACCAGGTGGTCTCCACGGACTTTAACGGCAATCCCCATTCTTC
CATCTTTGATGCTAAGGCTGGAATTGCCCTCAATGACAACTTCGTGAAGCTTGTTGCCTGGTACGACAAC
GAATATGGCTACAGTAACCGAGTGGTCGACCTCCTCCGCTACATGTTTAGCCGAGAGAAGTAA

Translation (440 aa):
MSRRDVVLTNVTVVQLRRDRCPCPCPCPCPCPCPVIRPPPPKVEDPPPTVEEQPPPPPPPPPPPPPPPPP
PPPQIEPDKFEEAPPPPPPPPPPPPPPPPPLQKPARELTVGINGFGRIGRLVLRVCMEKGIRVVAVNDPF
IDPEYMVYMFKYDSTHGRYKGNVEHKNGQLVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEA
ASAHISSGARRVVVTAPSPDAPMFVMGVNEKDYNPGSMTIVSNASCTTNCLAPLAKVIHENFGIVEGLMT
TVHSYTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELKGKLTGMAFRVPTPNVSVVDLT
CRLAKPASYSAITEAVKAAAKGPLAGILAYTEDQVVSTDFNGNPHSSIFDAKAGIALNDNFVKLVAWYDN
EYGYSNRVVDLLRYMFSREK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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