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Report for CCDS72222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72222.1 Public Mus musculus 9 Treh 23 108 98 CCDS HistoryNCBI Gene:58866Re-query CCDS DB by CCDS ID:72222.1Re-query CCDS DB by GeneID:58866See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071219.11 ENSMUSP00000071206.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071219.11Link to Ensembl Protein Viewer:ENSMUSP00000071206.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071219Re-query CCDS DB by Protein ID:ENSMUSP00000071206
Original member Current member NCBI NM_001277847.1 NP_001264776.1 Accepted alive Link to Nucleotide Sequence:NM_001277847.1Link to Protein Sequence:NP_001264776.1Re-query CCDS DB by Nucleotide ID:NM_001277847Re-query CCDS DB by Protein ID:NP_001264776Link to BLAST:NP_001264776.1

Chromosomal Locations for CCDS 72222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44673261 44673340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44681064 44681160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44681281 44681425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44681506 44681593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44682869 44682961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44683049 44683165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44683253 44683375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44683572 44683621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44683765 44683959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44684508 44684725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44684935 44685046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44685269 44685381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44685627 44685680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44685876 44686016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGACCTGGGAGCTGCACCTGCTGCTTCTGCTGGGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACCAC
CCTGTGAGAGATCTACTGCCATGGAGAGCTCCTGCACCAAGTTCAGATGGCCCAGCTCTACCAAGATGAC
AAGCAGTTTGTGGATATGTCACTGGCCACATCTCCAGATGAAGTCCTGCAGAAGTTCAGTGAGCTGGCCA
CAGTCCACAACCACAGCATCCCCAAGGAACAGCTTCAGGAATTTGTCCAGAGTCACTTCCAGCCCGTGGG
GCAGGAGCTGCAGTCCTGGACCCCTGAGGACTGGAAGGACAGCCCTCAGTTCCTGCAGAAGATCTCGGAT
GCTAATCTGCGTGTCTGGGCGGAGGAGCTACACAAGATCTGGAAAAAGCTGGGAAAGAAGGGACTCGTAC
TGGGTGATGGAAGGCCTGCTTCTTTCTGAGATGGCCTCAACAGTGAAGGGTATGCTGCAAAACTTTCTGG
ATCTGGTGAAGACCTACGGACATATCCCCAACGGTGGACGCATATATTACCTGCAACGGAGCCAGCCCCC
ACTCCTGACTCTCATGATGGATCGATATGTAGCTCATACCAAGGATGTCGCCTTCCTTCAGGAGAATATT
GGGACTCTAGCCTCTGAACTGGACTTCTGGACTGTGAACAGGACTGTCTCTGTAGTCTCAGGAGGACAAA
GCTATGTCTTAAATCGCTACTATGTCCCTTATGGGGGACCCAGGCCAGAGTCCTACAGGAAAGACGCAGA
ATTGGCAAACTCTGTGCCAGAAGGGGACCGAGAGACTCTGTGGGCTGAGCTCAAGGCTGGGGCTGAGTCT
GGCTGGGACTTCTCTTCACGCTGGCTTGTTGGAGGCCCAGACCCTGATTTGCTCAGCAGCATCCGAACCA
GCAAAATGGTACCCGCTGATCTGAACGCGTTCCTGTGCCAAGCAGAGGAACTGATGAGTAACTTCTACTC
CAGACTAGGGAACGACACAGAGGCCACAAAGTACAGGAACCTGCGGGCCCAGCGCTTGGCCGCCATGGAA
GCTGTCCTGTGGGACGAGCAGAAGGGTGCCTGGTTTGACTATGACTTGGAAAAGGGGAAGAAGAACCTGG
AGTTTTATCCCTCCAACCTCTCCCCACTTTGGGCTGGCTGCTTCTCAGACCCTAGTGTTGCTGACAAGGC
TCTGAAGTACTTGGAGGACAGCAAGATCTTGACCTACCAATATGGAATCCCAACCTCTCTTCGTAACACA
GGCCAGCAGTGGGACTTCCCCAATGCCTGGGCCCCACTGCAGGACCTGGTCATTAGAGGTTTGGCCAAGT
CAGCTTCCCCCCGGACTCAGGAGGTGGCTTTCCAGCTGGCCCAGAATTGGATCAAAACCAACTTCAAAGT
CTACTCCCAAAAGTCAGCGATGTTTGAGAAGTATGACATCAGCAACGGTGGACATCCAGGTGGAGGAGGG
GAGTATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTGGATCGCTATGGTG
ACCAGTTGACTTCAGGGACCCAGTTAGCTTCCCTGGGACCCCACTGCCTAGTGGCTGCCCTTCTTCTCAG
TCTTCTGCTACAGTGA

Translation (541 aa):
MTWELHLLLLLGLGLRSQEALPPPCERSTAMESSCTKFRWPSSTKMTSSLWICHWPHLQMKSCRSSVSWP
QSTTTASPRNSFRNLSRVTSSPWGRSCSPGPLRTGRTALSSCRRSRMLICVSGRRSYTRSGKSWERRDSY
WVMEGLLLSEMASTVKGMLQNFLDLVKTYGHIPNGGRIYYLQRSQPPLLTLMMDRYVAHTKDVAFLQENI
GTLASELDFWTVNRTVSVVSGGQSYVLNRYYVPYGGPRPESYRKDAELANSVPEGDRETLWAELKAGAES
GWDFSSRWLVGGPDPDLLSSIRTSKMVPADLNAFLCQAEELMSNFYSRLGNDTEATKYRNLRAQRLAAME
AVLWDEQKGAWFDYDLEKGKKNLEFYPSNLSPLWAGCFSDPSVADKALKYLEDSKILTYQYGIPTSLRNT
GQQWDFPNAWAPLQDLVIRGLAKSASPRTQEVAFQLAQNWIKTNFKVYSQKSAMFEKYDISNGGHPGGGG
EYEVQEGFGWTNGLALMLLDRYGDQLTSGTQLASLGPHCLVAALLLSLLLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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