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Report for CCDS72379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72379.1 Public Mus musculus X Hs6st2 23 108 98 CCDS HistoryNCBI Gene:50786Re-query CCDS DB by CCDS ID:72379.1Re-query CCDS DB by GeneID:50786See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114871.1 ENSMUSP00000110521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114871.1Link to Ensembl Protein Viewer:ENSMUSP00000110521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114871Re-query CCDS DB by Protein ID:ENSMUSP00000110521
Original member NCBI NM_001290467.1 NP_001277396.1 Updated not alive Link to Nucleotide Sequence:NM_001290467.1Link to Protein Sequence:NP_001277396.1Re-query CCDS DB by Nucleotide ID:NM_001290467Re-query CCDS DB by Protein ID:NP_001277396
Current member NCBI NM_001290467.2 NP_001277396.1 Accepted alive Link to Nucleotide Sequence:NM_001290467.2Link to Protein Sequence:NP_001277396.1Re-query CCDS DB by Nucleotide ID:NM_001290467Re-query CCDS DB by Protein ID:NP_001277396Link to BLAST:NP_001277396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277396.1 612 Q80UW0-1 612 100% 0 0

Chromosomal Locations for CCDS 72379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 51389470 51390361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51679890 51680408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51681175 51681602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGGCACTGCCTGCGTTTGCAGCCCGGGCGCTCGGGCCGCCACTGCAACCGGAGCAAGGAGCGCCCGCCC
GCACCACCTGTCCCCGCCGGCATTCCAGAGTAGAGGCCGAATTGGCAGCAAGCCGGCCCGGGTCTGTTGC
CGCCTCAGTCCGCGCCGGCCCTCCTAGGGGTGTGTCTCTCGGATTCAACTCCCCGCCGCTCCAGGACAAG
CCCCCAAAGGCATTTTCTTCCTTGGCGGGAGCCTTGCGCGCCCCGCTCTTCGCGCTGCTGCCTCGAGGCC
GCCGCAGGCGGATGCACGACCTCAGGCGACGCTGGGACCTGGGCTCCCTCTGCCGGGCCCTGCTCACTCG
GGGCCTGGCAGCCGTGGGCCACTCGCTCAAGCACGTGCTCAGTGCGATCTTCTCCAAGATTTTCGGTCCC
TTGGCCAGCGTCGGGAACATGGATGAGAAATCTAACAAGCTGCTGCTGGCTTTGGTGATGCTCTTCCTAT
TTGCGGTGATCGTCCTCCAATACGTGTGCCCCGGCACAGAATGCCAGCTCCTCCGCCTGCAGGCGTTCAG
CTCCCCGGTGCCGGATCCGTACCGCTCGGAGGATGAGAGTTCGGCCAGGTTTGTACCCCGCTACAATTTC
AGCCGCGGCGATCTCCTGCGCAAGGTAGACTTCGACATCAAGGGCGATGACCTGATCGTGTTCCTGCACA
TCCAGAAGACTGGGGGCACCACTTTTGGCCGTCACCTGGTGCGCAACATCCAGCTGGAGCAGCCATGTGA
GTGCCGCGTGGGGCAGAAGAAATGCACTTGCCACCGGCCGGGTAAGAGGGAGACCTGGCTCTTCTCCAGG
TTCTCCACCGGCTGGAGCTGCGGGCTGCATGCCGACTGGACCGAGCTCACCAGCTGCGTGCCGGCGGTGG
TGGATGGCAAGCGCGACGCCAGGCTGAGACCTTCCAGGAACTTCCATTACATTACCATCCTGAGAGACCC
AGTGTCACGGTACTTGAGTGAATGGAGGCATGTCCAGAGAGGAGCAACTTGGAAAGCATCCCTGCACGTC
TGTGATGGAAGGCCCCCAACCTCTGAAGAGCTGCCCAGCTGCTACACCGGTGATGACTGGTCTGGATGCC
CTCTCAAAGAGTTCATGGACTGTCCCTATAATCTGGCCAACAACCGCCAAGTTCGCATGCTATCTGACCT
GACTCTAGTGGGATGCTACAACCTCTCTGTCATGCCTGAAAAGCAAAGAAACAAAGTCCTTCTGGAAAGT
GCCAAATCCAATCTGAAGCACATGGCGTTCTTTGGCCTCACTGAGTTTCAGCGCAAGACCCAGTACCTGT
TTGAGAAGACCTTCAACATGAACTTTATCTCGCCGTTTACCCAGTATAATACCACTAGGGCCTCTAGTGT
TGAGATCAATGAGGAAATCCAAAAGCGTATTGAGGGACTGAATTTTCTGGATATGGAGTTGTACAGCTAT
GCTAAAGACCTCTTTCTGCAAAGGTATCAGTTCATGAGGCAGAAAGAACATCAGGATGCCAGGCGGAAGC
GTCAGGAGCAACGCAAATTTCTGAAGGGAAGGTTCCTTCAGACCCATTTCCAGAGTCAGAGTCAGGGTCA
GAGCCAGAGCCAGAGTCCAGGTCAGAATCTGAGTCAGAATCCAAATCCTAACCCAAATCAGAACCTGACT
CAGAACCTGAGTCACAATCTGACTCCGAGTTCAAATCCCAATTCGACCCAGAGGGAGAACCGGGGAAGTC
AGAAGCAGGGCTCAGGCCAGGGACAAGGTGATAGCGGCACCAGCAATGGCACCAATGACTACATAGGGAG
CGTAGAGACATGGCGCTAA

Translation (612 aa):
MALPAFAARALGPPLQPEQGAPARTTCPRRHSRVEAELAASRPGSVAASVRAGPPRGVSLGFNSPPLQDK
PPKAFSSLAGALRAPLFALLPRGRRRRMHDLRRRWDLGSLCRALLTRGLAAVGHSLKHVLSAIFSKIFGP
LASVGNMDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFSSPVPDPYRSEDESSARFVPRYNF
SRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCECRVGQKKCTCHRPGKRETWLFSR
FSTGWSCGLHADWTELTSCVPAVVDGKRDARLRPSRNFHYITILRDPVSRYLSEWRHVQRGATWKASLHV
CDGRPPTSEELPSCYTGDDWSGCPLKEFMDCPYNLANNRQVRMLSDLTLVGCYNLSVMPEKQRNKVLLES
AKSNLKHMAFFGLTEFQRKTQYLFEKTFNMNFISPFTQYNTTRASSVEINEEIQKRIEGLNFLDMELYSY
AKDLFLQRYQFMRQKEHQDARRKRQEQRKFLKGRFLQTHFQSQSQGQSQSQSPGQNLSQNPNPNPNQNLT
QNLSHNLTPSSNPNSTQRENRGSQKQGSGQGQGDSGTSNGTNDYIGSVETWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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