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Report for CCDS72796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72796.1 Public Homo sapiens 1 SLC1A7 24 110 108 CCDS HistoryNCBI Gene:6512Re-query CCDS DB by CCDS ID:72796.1Re-query CCDS DB by GeneID:6512See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72796.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611397.5 ENSP00000484987.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611397.5Link to Ensembl Protein Viewer:ENSP00000484987.1Re-query CCDS DB by Nucleotide ID:ENST00000611397Re-query CCDS DB by Protein ID:ENSP00000484987
Original member Current member NCBI NM_001287597.2 NP_001274526.1 Accepted alive Link to Nucleotide Sequence:NM_001287597.2Link to Protein Sequence:NP_001274526.1Re-query CCDS DB by Nucleotide ID:NM_001287597Re-query CCDS DB by Protein ID:NP_001274526Link to BLAST:NP_001274526.1

Chromosomal Locations for CCDS 72796.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53088076 53088246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53088877 53088979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53089800 53089934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53090612 53090806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53092554 53092787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53093461 53093560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53103346 53103568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53105732 53105774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53134350 53134429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53142315 53142449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGTGCCGCATGCCATCTTGGCACGGGGGAGGGACGTGTGCAGGCGGAATGGACTCCTCATCCTGTCTG
TGCTGTCTGTCATCGTGGGCTGCCTCCTCGGCTTCTTCTTGAGGACCCGGCGCCTCTCACCACAGGAAAT
TAGTTACTTCCAGTTCCCTGGAGAGCTCCTGATGAGGATGCTGAAGATGATGATCCTGCCACTGGTGGTC
TCCAGGAACATGTTCCCAGCCAACCTAGTAGAAGCCACATTCAAACAGTACCGCACCAAGACCACCCCAG
TTGTCAAGTCCCCCAAGGTGGCACCAGAGGAGGCCCCTCCTCGGCGGATCCTCATCTACGGGGTCCAGGA
GGAGAATGGCTCCCATGTGCAGAACTTCGCCCTGGACCTGACCCCGCCGCCCGAGGTCGTTTACAAGTCA
GAGCCGGGCACCAGCGATGGCATGAATGTGCTGGGCATCGTCTTCTTCTCTGCCACCATGGGCATCATGC
TGGGCCGCATGGGTGACAGCGGGGCCCCCCTGGTCAGCTTCTGCCAGTGCCTCAATGAGTCGGTCATGAA
GATCGTGGCGGTGGCTGTGTGGTATTTCCCCTTCGGCATTGTGTTCCTCATTGCGGGTAAGATCCTGGAG
ATGGACGACCCCAGGGCCGTCGGCAAGAAGCTGGGCTTCTACTCAGTCACCGTGGTGTGCGGGCTGGTGC
TCCACGGGCTCTTTATCCTGCCCCTGCTCTACTTCTTCATCACCAAGAAGAATCCCATCGTCTTCATCCG
TGGCATCCTGCAGGCTCTGCTCATCGCGCTGGCCACCTCCTCCAGCTCAGCCACACTGCCCATCACCTTC
AAGTGCCTGCTGGAGAACAACCACATCGACCGGCGCATCGCTCGCTTCGTGCTGCCCGTGGGTGCCACCA
TCAACATGGACGGCACTGCGCTCTACGAGGCTGTGGCCGCCATCTTCATCGCCCAGGTCAACAACTACGA
GCTGGACTTTGGCCAGATCATCACCATCAGTATCACAGCCACTGCAGCCAGCATTGGGGCAGCTGGCATC
CCCCAGGCCGGCCTCGTCACCATGGTCATCGTGCTCACCTCCGTGGGACTGCCCACCGATGACATCACCC
TCATCATTGCCGTTGACTGGGCTCTGGACCGTTTCCGCACCATGATTAACGTGCTGGGTGATGCGCTGGC
AGCGGGGATCATGGCCCATATATGTCGGAAGGATTTTGCCCGGGACACAGGCACCGAGACCTGTTTCCCT
TCACCAGAAACTGCTGCCCTGCGAGACCAAGCCAGTGAGCCTCCAGGAGATCGTGGCAGCCCAGCAGAAT
GGCTGTGTGAAGAGTGTAGCCGAGGCCTCCGAGCTCACCCTGGGCCCCACCTGCCCCCACCACGTCCCCG
TTCAAGTGGAGCAGGATGA

Translation (472 aa):
MVPHAILARGRDVCRRNGLLILSVLSVIVGCLLGFFLRTRRLSPQEISYFQFPGELLMRMLKMMILPLVV
SRNMFPANLVEATFKQYRTKTTPVVKSPKVAPEEAPPRRILIYGVQEENGSHVQNFALDLTPPPEVVYKS
EPGTSDGMNVLGIVFFSATMGIMLGRMGDSGAPLVSFCQCLNESVMKIVAVAVWYFPFGIVFLIAGKILE
MDDPRAVGKKLGFYSVTVVCGLVLHGLFILPLLYFFITKKNPIVFIRGILQALLIALATSSSSATLPITF
KCLLENNHIDRRIARFVLPVGATINMDGTALYEAVAAIFIAQVNNYELDFGQIITISITATAASIGAAGI
PQAGLVTMVIVLTSVGLPTDDITLIIAVDWALDRFRTMINVLGDALAAGIMAHICRKDFARDTGTETCFP
SPETAALRDQASEPPGDRGSPAEWLCEECSRGLRAHPGPHLPPPRPRSSGAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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