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Report for CCDS75561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75561.1 Public Homo sapiens 7 SLC29A4 24 110 108 CCDS HistoryNCBI Gene:222962Re-query CCDS DB by CCDS ID:75561.1Re-query CCDS DB by GeneID:222962See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75561.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406453.3 ENSP00000385845.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406453.3Link to Ensembl Protein Viewer:ENSP00000385845.3Re-query CCDS DB by Nucleotide ID:ENST00000406453Re-query CCDS DB by Protein ID:ENSP00000385845
Original member Current member NCBI NM_001300847.3 NP_001287776.1 Accepted alive Link to Nucleotide Sequence:NM_001300847.3Link to Protein Sequence:NP_001287776.1Re-query CCDS DB by Nucleotide ID:NM_001300847Re-query CCDS DB by Protein ID:NP_001287776Link to BLAST:NP_001287776.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287776.1 516 Q7RTT9-2 516 100% 0 0

Chromosomal Locations for CCDS 75561.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 5287817 5287985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5290732 5290863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5291124 5291237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5291730 5291821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5294865 5294934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5296936 5297198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5298988 5299126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5299240 5299427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5300422 5300662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5302797 5302939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGGCTCCGTGGGGAGCCAGCGCCTTGAGGAGCCCAGCGTGGCAGGCACACCAGACCCGGGCGTAGTGA
TGAGCTTCACCTTCGACAGTCACCAGCTGGAGGAGGCGGCGGAGGCGGCTCAGGGCCAGGGCCTTAGGGC
CAGGGGCGTCCCAGCTTTCACGGATACTACATTGGACGAGCCAGTGCCCGATGACCGTTATCACGCCATC
TACTTTGCGATGCTGCTGGCTGGCGTGGGCTTCCTGCTGCCATACAACAGCTTCATCACGGACGTGGACT
ACCTGCATCACAAGTACCCAGGGACCTCCATCGTGTTTGACATGAGCCTCACCTACATCTTGGTGGCACT
GGCAGCTGTCCTCCTGAACAACGTCCTGGTGGAGAGACTGACCCTGCACACCAGGATCACCGCAGCATCT
GCGACGTGTGGCTGCAGCTCTTCTCTCGGGACCAGGCCTACGCCATCAACCTGGCCGCTGTGGGCACCGT
GGCCTTCGGCTGCACAGCAATCCAGCTTCTACGGGTACACGGGGATGCTGCCCAAGCGGTACACGCAGGG
GGTGATGACCGGGGAGAGCACGGCGGGCGTGATGATCTCTCTGAGCCGCATCCTCACGAAGCTGCTGCTG
CCCGACGAGCGCGCCAGCACGCTCATCTTCTTCCTGGTGTCGGTGGCGCTGGAGCTGCTGTGTTTCCTGC
TGCACCTGTTAGTGCGGCGCAGCCGCTTCGTGCTCTTCTATACCACACGGCCGCGTGACAGCCACCGGGG
CAGGCCAGGCCTGGGCAGGGGCTATGGCTACCGCGTGCACCACGACGTTGTCGCCGGGGACGTCCACTTC
GAGCACCCAGCCCCGGCCCTGGCCCCCAACGAGTCCCCAAAGGACAGCCCAGCCCACGAGGTGACCGGCA
GCGGCGGGGCCTACATGCGCTTTGATGTGCCGCGGCCAAGGGTCCAGCGCAGCTGGCCCACCTTCAGAGC
CCTGTTACTGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATGCTCTCCATCGCCGTGACCTAC
TTCATCACGCTGTGCCTGTTCCCCGGCCTCGAGTCTGAGATCCGCCACTGCATCCTGGGCGAGTGGCTGC
CCATCCTCATCATGGCTGTGTTCAACCTGTCAGACTTCGTGGGCAAGATCCTGGCAGCCCTGCCCGTGGA
CTGGCGGGGCACCCACCTGCTGGCCTGCTCCTGCCTGCGTGTGGTCTTCATCCCCCTCTTCATCCTGTGC
GTCTACCCCAGCGGCATGCCCGCCCTCCGTCACCCCGCCTGGCCCTGCATCTTCTCACTGCTCATGGGCA
TCAGCAACGGCTACTTCGGCAGCGTGCCCATGATCCTGGCGGCAGGCAAAGTGAGCCCCAAGCAGCGGGA
GCTGGCAGGGAACACCATGACCGTGTCCTACATGTCAGGGCTGACGCTGGGGTCCGCCGTGGCCTACTGC
ACCTACAGCCTCACCCGCGACGCTCACGGCAGCTGCCTGCACGCCTCCACCGCCAATGGTTCCATCCTCG
CAGGCCTCTGA

Translation (516 aa):
MGSVGSQRLEEPSVAGTPDPGVVMSFTFDSHQLEEAAEAAQGQGLRARGVPAFTDTTLDEPVPDDRYHAI
YFAMLLAGVGFLLPYNSFITDVDYLHHKYPGTSIVFDMSLTYILVALAAVLLNNVLVERLTLHTRITAAS
ATCGCSSSLGTRPTPSTWPLWAPWPSAAQQSSFYGYTGMLPKRYTQGVMTGESTAGVMISLSRILTKLLL
PDERASTLIFFLVSVALELLCFLLHLLVRRSRFVLFYTTRPRDSHRGRPGLGRGYGYRVHHDVVAGDVHF
EHPAPALAPNESPKDSPAHEVTGSGGAYMRFDVPRPRVQRSWPTFRALLLHRYVVARVIWADMLSIAVTY
FITLCLFPGLESEIRHCILGEWLPILIMAVFNLSDFVGKILAALPVDWRGTHLLACSCLRVVFIPLFILC
VYPSGMPALRHPAWPCIFSLLMGISNGYFGSVPMILAAGKVSPKQRELAGNTMTVSYMSGLTLGSAVAYC
TYSLTRDAHGSCLHASTANGSILAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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