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Report for CCDS77180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77180.1 Public Homo sapiens 18 PIK3C3 24 110 108 CCDS HistoryNCBI Gene:5289Re-query CCDS DB by CCDS ID:77180.1Re-query CCDS DB by GeneID:5289See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77180.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398870.7 ENSP00000381845.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398870.7Link to Ensembl Protein Viewer:ENSP00000381845.2Re-query CCDS DB by Nucleotide ID:ENST00000398870Re-query CCDS DB by Protein ID:ENSP00000381845
Original member Current member NCBI NM_001308020.2 NP_001294949.1 Accepted alive Link to Nucleotide Sequence:NM_001308020.2Link to Protein Sequence:NP_001294949.1Re-query CCDS DB by Nucleotide ID:NM_001308020Re-query CCDS DB by Protein ID:NP_001294949Link to BLAST:NP_001294949.1

Chromosomal Locations for CCDS 77180.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 41955292 41955359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41962489 41962632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41970327 41970456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41987812 41987898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41990459 41990554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41993270 41993341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41995890 41995994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 41996638 41996730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42004356 42004541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42013442 42013596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42015476 42015566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42020638 42020705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42027443 42027548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42029325 42029441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42033826 42033957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42037692 42037820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42038781 42038850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42040677 42040741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42043733 42043817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42049531 42049605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42057883 42058051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42064740 42064830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42067388 42067513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42081123 42081137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGGGGGAAGCAGAGAAGTTTCACTACATCTATAGTTGTGACCTGGATATCAACGTCCAGCTTAAGATCT
GGAATGAATGGCTGAAACTACCAGTAAAATACCCTGACCTGCCCAGGAATGCCCAAGTGGCCCTCACCAT
ATGGGATGTGTATGGTCCCGGAAAAGCAGTGCCTGTAGGAGGAACAACGGTTTCGCTCTTTGGAAAATAC
GGCATGTTTCGCCAAGGGATGCATGACTTGAAAGTCTGGCCTAATGTAGAAGCAGATGGATCAGAACCCA
CAAAAACTCCTGGCAGAACAAGTAGCACTCTCTCAGAAGATCAGATGAGCCGTCTTGCCAAGCTCACCAA
AGCTCATCGACAAGGACACATGGTGAAAGTAGATTGGCTGGATAGATTGACATTTAGAGAAATAGAAATG
ATAAATGAGAGTGAAAAACGAAGTTCTAATTTCATGTACCTGATGGTTGAATTTCGATGTGTCAAGTGTG
ATGATAAGGAATATGGTATTGTTTATTATGAAAAGGACGGTGATGAATCATCTCCAATTTTAACAAGTTT
TGAATTAGTGAAAGTTCCTGACCCCCAGATGTCTATGGAGAATTTAGTTGAGAGCAAACACCACAAGCTT
GCCCGGAGTTTAAGAAGTGGACCTTCTGACCACGATCTGAAACCCAATGCTGCCACGAGAGATCAGTTAA
ATATTATTGTGAGTTATCCACCAACCAAGCAACTTACATATGAAGAACAAGATCTTGTTTGGAAGTTTAG
ATATTATCTTACGAATCAAGAAAAAGCCTTGACAAAATTCTTGAAATGTGTTAATTGGGATCTACCTCAA
GAGGCCAAACAGGCCTTGGAACTTCTGGGAAAATGGAAGCCGATGGATGTAGAGGACTCCTTGGAGCTGT
TATCCTCTCATTACACCAACCCAACTGTGAGGCGTTATGCTGTTGCCCGGTTGCGACAGGCCGATGATGA
GGATTTGTTGATGTACCTATTACAATTGGTCCAGGCTCTCAAATATGAAAATTTTGATGATATAAAGAAT
GGATTGGAACCTACCAAGAAGGATAGTCAGAGTTCAGTGTCAGAAAATGTGTCAAATTCTGGAATAAATT
CTGCAGAAATAGATAGCTCCCAAATTATAACCAGCCCCCTTCCTTCAGTCTCTTCACCTCCTCCTGCATC
AAAAACAAAAGAAGTTCCAGATGGCGAAAATCTGGAACAAGATCTCTGTACCTTCTTGATATCGAGAGCC
TGCAAAAACTCAACACTGGCTAATTATTTATACTGGTATGTGATAGTGGAATGTGAAGATCAAGATACTC
AGCAGAGAGATCCAAAGACCCATGAGATGTACTTGAACGTAATGAGAAGATTCAGCCAAGCATTGTTGAA
GGGTGATAAGTCTGTCAGAGTTATGCGTTCTTTGCTGGCTGCACAACAGACATTTGTAGATCGGTTGGTG
CATCTAATGAAGGCAGTACAACGCGAAAGTGGAAATCGTAAGAAAAAGAATGAGAGACTACAGGCATTGC
TTGGAGATAATGAAAAGATGAATTTGTCAGATGTGGAACTTATCCCGTTGCCTTTAGAACCCCAAGTGAA
AATTAGAGGAATAATTCCGGAAACAGCTACACTGTTTAAAAGTGCCCTTATGCCTGCACAGTTGTTTTTT
AAGACGGAAGATGGAGGCAAATATCCAGTTATATTTAAGCATGGAGATGATTTACGTCAAGATCAACTTA
TTCTTCAAATCATTTCACTCATGGACAAGCTGTTACGGAAAGAAAATCTGGACTTGAAATTGACACCTTA
TAAGGTGTTAGCCACCAGTACAAAACATGGCTTCATGCAGTTTATCCAGTCAGTTCCTGTGGCTGAAGTT
CTTGATACAGAGGGAAGCATTCAGAACTTTTTTAGAAAATATGCACCAAGTGAGAATGGGCCAAATGGGA
TTAGTGCTGAGGTCATGGACACTTACGTTAAAAGCTGTGCTGGATATTGCGTGATCACCTATATACTTGG
AGTTGGAGACAGGCACCTGGATAACCTTTTGCTAACAAAAACAGGCAAACTCTTCCACATAGACTTTGGA
TATATTTTGGGTCGGGATCCAAAGCCTCTTCCTCCACCAATGAAGCTGAATAAAGAAATGGTAGAAGGAA
TGGGGGGCACACAGAGTGAGCAGTACCAAGAGTTCCGTAAACAGTGTTACACGGCTTTCCTCCACCTGCG
AAGGTATTCTAATCTGATTTTGAACTTGTTTTCCTTGATGGTTGATGCAAACATTCCAGATATTGCACTT
GAACCAGATAAAACTGTGAAAAAGGTTCAGGATAAATTCCGCTTAGACCTGTCGGATGAAGAGGCTGTGC
ATTACATGCAGAGTCTGATTGATGAGAGTGTCCATGCTCTTTTTGCTGCAGTGGTGGAACAGATTCACAA
GTTTGCCCAGTACTGGAGAAAATGA

Translation (824 aa):
MGEAEKFHYIYSCDLDINVQLKIWNEWLKLPVKYPDLPRNAQVALTIWDVYGPGKAVPVGGTTVSLFGKY
GMFRQGMHDLKVWPNVEADGSEPTKTPGRTSSTLSEDQMSRLAKLTKAHRQGHMVKVDWLDRLTFREIEM
INESEKRSSNFMYLMVEFRCVKCDDKEYGIVYYEKDGDESSPILTSFELVKVPDPQMSMENLVESKHHKL
ARSLRSGPSDHDLKPNAATRDQLNIIVSYPPTKQLTYEEQDLVWKFRYYLTNQEKALTKFLKCVNWDLPQ
EAKQALELLGKWKPMDVEDSLELLSSHYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKYENFDDIKN
GLEPTKKDSQSSVSENVSNSGINSAEIDSSQIITSPLPSVSSPPPASKTKEVPDGENLEQDLCTFLISRA
CKNSTLANYLYWYVIVECEDQDTQQRDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLV
HLMKAVQRESGNRKKKNERLQALLGDNEKMNLSDVELIPLPLEPQVKIRGIIPETATLFKSALMPAQLFF
KTEDGGKYPVIFKHGDDLRQDQLILQIISLMDKLLRKENLDLKLTPYKVLATSTKHGFMQFIQSVPVAEV
LDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLTKTGKLFHIDFG
YILGRDPKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFSLMVDANIPDIAL
EPDKTVKKVQDKFRLDLSDEEAVHYMQSLIDESVHALFAAVVEQIHKFAQYWRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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