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Report for CCDS77184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77184.1 Public Homo sapiens 18 ST8SIA5 24 110 108 CCDS HistoryNCBI Gene:29906Re-query CCDS DB by CCDS ID:77184.1Re-query CCDS DB by GeneID:29906See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77184.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538168.5 ENSP00000445492.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538168.5Link to Ensembl Protein Viewer:ENSP00000445492.1Re-query CCDS DB by Nucleotide ID:ENST00000538168Re-query CCDS DB by Protein ID:ENSP00000445492
Original member Current member NCBI NM_001307986.2 NP_001294915.1 Accepted alive Link to Nucleotide Sequence:NM_001307986.2Link to Protein Sequence:NP_001294915.1Re-query CCDS DB by Nucleotide ID:NM_001307986Re-query CCDS DB by Protein ID:NP_001294915Link to BLAST:NP_001294915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001294915.1 412 O15466-2 412 100% 0 0

Chromosomal Locations for CCDS 77184.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46680042 46680510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46681972 46682064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46686174 46686286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46688775 46688919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46692169 46692255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46704572 46704664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46721362 46721469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46756378 46756508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGCGCTACGCGGACCCCTCGGCCAACCGGGATTTGTTGGGGAGCCGAACTTTGCTCTTCATCTTCATCT
GCGCCTTTGCCTTGGTGACCTTGCTGCAACAGATCCTGTATGGCAGGAACTACATTAAGAGAGGCCTCCA
GTTTGGTTGGCAGAGTGGTGACCAGCTGACCAATTGGACGGGGCTCTTTAATGTCACGGATGATCCAGCA
GTGCAGAGCGGCAGTGACTCCAGCTCCAGGTACTTTGAATTTTATGAGGGGCCTTTTGAATATAACTCCA
CAAGATGCCTGGAGCTGAGGCACGAAATATTGGAAGTGAAGGTGCTGTCCATGGTGAAGCAGTCAGAGCT
GTTCGACAGGTGGAAGAGCCTCCAGATGTGCAAATGGGCGATGAACATCTCTGAGGCCAACCAGTTCAAG
TCTACTCTGTCCAGGTGCTGCAACGCCCCTGCCTTTCTCTTCACCACCCAGAAGAACACTCCCCTGGGGA
CAAAGCTCAAGTATGAGGTGGACACCAGTGGCATCTACCACATCAACCAGGAGATCTTCCGCATGTTTCC
CAAGGACATGCCCTACTACCGGTCCCAGTTTAAGAAGTGTGCTGTAGTGGGCAACGGAGGCATCTTGAAG
AACAGCCGCTGCGGGAGGGAGATCAACAGCGCCGACTTCGTCTTCCGGTGCAACCTGCCCCCCATCTCAG
AGAAGTACACCATGGATGTGGGGGTGAAGACGGATGTGGTCACTGTGAACCCCAGCATCATCACAGAGAG
GTTCCACAAGCTGGAGAAGTGGCGGCGGCCGTTCTATCGCGTGCTGCAGGTGTACGAGAACGCGTCGGTG
CTGCTGCCTGCCTTCTACAACACGCGCAACACCGACGTGTCCATCCGCGTCAAGTACGTGCTGGACGACT
TCGAATCGCCGCAAGCTGTCTACTACTTCCATCCGCAGTACCTGGTCAACGTGTCGCGCTACTGGCTCAG
CCTGGGGGTGCGCGCCAAGCGCATCAGCACCGGCCTCATTCTGGTCACTGCGGCGCTGGAGCTCTGTGAG
GAGGTGCACCTCTTTGGCTTCTGGGCCTTCCCCATGAACCCCTCGGGCCTCTACATCACTCACCACTACT
ATGACAACGTCAAGCCGCGTCCCGGCTTCCACGCCATGCCCTCTGAGATCTTCAACTTCCTGCACTTGCA
CAGCCGAGGCATCCTCCGCGTGCACACGGGCACCTGCAGCTGCTGCTGA

Translation (412 aa):
MRYADPSANRDLLGSRTLLFIFICAFALVTLLQQILYGRNYIKRGLQFGWQSGDQLTNWTGLFNVTDDPA
VQSGSDSSSRYFEFYEGPFEYNSTRCLELRHEILEVKVLSMVKQSELFDRWKSLQMCKWAMNISEANQFK
STLSRCCNAPAFLFTTQKNTPLGTKLKYEVDTSGIYHINQEIFRMFPKDMPYYRSQFKKCAVVGNGGILK
NSRCGREINSADFVFRCNLPPISEKYTMDVGVKTDVVTVNPSIITERFHKLEKWRRPFYRVLQVYENASV
LLPAFYNTRNTDVSIRVKYVLDDFESPQAVYYFHPQYLVNVSRYWLSLGVRAKRISTGLILVTAALELCE
EVHLFGFWAFPMNPSGLYITHHYYDNVKPRPGFHAMPSEIFNFLHLHSRGILRVHTGTCSCC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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