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Report for CCDS77904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77904.1 Public Homo sapiens 4 QDPR 24 110 108 CCDS HistoryNCBI Gene:5860Re-query CCDS DB by CCDS ID:77904.1Re-query CCDS DB by GeneID:5860See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77904.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428702.6 ENSP00000390944.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428702.6Link to Ensembl Protein Viewer:ENSP00000390944.2Re-query CCDS DB by Nucleotide ID:ENST00000428702Re-query CCDS DB by Protein ID:ENSP00000390944
Original member Current member NCBI NM_001306140.2 NP_001293069.1 Accepted alive Link to Nucleotide Sequence:NM_001306140.2Link to Protein Sequence:NP_001293069.1Re-query CCDS DB by Nucleotide ID:NM_001306140Re-query CCDS DB by Protein ID:NP_001293069Link to BLAST:NP_001293069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293069.1 213 P09417-2 213 100% 0 0

Chromosomal Locations for CCDS 77904.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 17487131 17487236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17490662 17490745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17492232 17492340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17501719 17501859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17504379 17504475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17511950 17512054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGCGGCGGCGGCGGCTGCAGGCGAGGCGCGCCGGGTGCTGGTGTACGGCGGCAGGGGCGCTCTGGGTT
CTCGATGCGTGCAGGCTTTTCGGGCCCGCAACTGGGTGACTGCTGAGGTTGGAAAGCTCTTGGGTGAAGA
GAAGGTGGATGCAATTCTTTGCGTTGCTGGAGGATGGGCCGGGGGCAATGCCAAATCCAAGTCTCTCTTT
AAGAACTGTGACCTGATGTGGAAGCAGAGCATATGGACATCGACCATCTCCAGCCATCTGGCTACCAAGC
ATCTCAAGGAAGGAGGCCTCCTGACCTTGGCTGGCGCAAAGGCTGCCCTGGATGGGACTCCTGGTATGAT
CGGGTACGGCATGGCCAAGGGTGCTGTTCACCAGCTCTGCCAGAGCCTGGCTGGGAAGAACAGCGGCATG
CCGCCCGGGGCAGCCGCCATCGCTGTGCTCCCGGTTACCCTGGATACCCCGATGAACAGGAAATCAATGC
CTGAGGCTGACTTCAGCTCCTGGACACCCTTAGAATTCCTAGTTGAAACTTTCCATGACTGGATCACAGG
GAAAAACCGACCGAGCTCAGGAAGCCTAATCCAGGTGGTAACCACAGAAGGAAGGACGGAACTCACCCCA
GCATATTTTTAG

Translation (213 aa):
MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNWVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLF
KNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGM
PPGAAAIAVLPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELTP
AYF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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