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Report for CCDS78073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78073.1 Public Homo sapiens 5 SLC36A1 24 110 108 CCDS HistoryNCBI Gene:206358Re-query CCDS DB by CCDS ID:78073.1Re-query CCDS DB by GeneID:206358See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78073.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429484.6 ENSP00000395640.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429484.6Link to Ensembl Protein Viewer:ENSP00000395640.2Re-query CCDS DB by Nucleotide ID:ENST00000429484Re-query CCDS DB by Protein ID:ENSP00000395640
Original member Current member NCBI NM_001308151.2 NP_001295080.1 Accepted alive Link to Nucleotide Sequence:NM_001308151.2Link to Protein Sequence:NP_001295080.1Re-query CCDS DB by Nucleotide ID:NM_001308151Re-query CCDS DB by Protein ID:NP_001295080Link to BLAST:NP_001295080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295080.1 243 Q7Z2H8-4 243 100% 0 0

Chromosomal Locations for CCDS 78073.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 151458793 151458935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151463553 151463643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151464514 151464602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151465074 151465169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151467199 151467283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151467707 151467925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151469246 151469254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGTCCACGCAGAGACTTCGGAATGAAGACTACCACGACTACAGCTCCACGGACGTGAGCCCTGAGGAGA
GCCCGTCGGAAGGCCTCAACAACCTCTCCTCCCCGGGCTCCTACCAGCGCTTTGGTCAAAGCAATAGCAC
AACATGGTTCCAGACCTTGATCCACCTGTTAAAAGGCAACATTGGCACAGGACTCCTGGGACTCCCTCTG
GCGGTGAAAAATGCAGGCATCGTGATGGGTCCCATCAGCCTGCTGATCATAGGCATCGTGGCCGTGCACT
GCATGGGTATCCTGGTGAAATGTGCTCACCACTTCTGCCGCAGGCTGAATAAATCCTTTGTGGATTATGG
TGATACTGTGATGTATGGACTAGAATCCAGCCCCTGCTCCTGGCTCCGGAACCACGCACACTGGGGAAGA
CGTGTTGTGGACTTCTTCCTGATTGTCACCCAGCTGGGATTCTGCTGTGTCTATTTTGTGTTTCTGGCTG
ACAACTTTAAACAGGTGATAGAAGCGGCCAATGGGACCACCAATAACTGCCACAACAATGAGACGGTGAT
TCTGACGCCTACCATGGACTCGCGACTCTACATGCTCTCCTTCCTGCCCTTCCTGGTGCTGCTGGTTTTC
ATCAGGAACCTCCGAGCCCTGTCCATCTTCTCCCTGTTGGCCAACATCACCATGCTGGTCAGCTTGGTCA
TGATCTACCAGTTCATTGTTCAGATCCTGTGA

Translation (243 aa):
MSTQRLRNEDYHDYSSTDVSPEESPSEGLNNLSSPGSYQRFGQSNSTTWFQTLIHLLKGNIGTGLLGLPL
AVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGR
RVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVF
IRNLRALSIFSLLANITMLVSLVMIYQFIVQIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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