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Report for CCDS7839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7839.1 Public Homo sapiens 11 LDHA 24 110 108 CCDS HistoryNCBI Gene:3939Re-query CCDS DB by CCDS ID:7839.1Re-query CCDS DB by GeneID:3939See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379412.9 ENSP00000368722.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379412.9Link to Ensembl Protein Viewer:ENSP00000368722.5Re-query CCDS DB by Nucleotide ID:ENST00000379412Re-query CCDS DB by Protein ID:ENSP00000368722
Original member Current member EBI ENST00000422447.8 ENSP00000395337.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000422447.8Link to Ensembl Protein Viewer:ENSP00000395337.3Re-query CCDS DB by Nucleotide ID:ENST00000422447Re-query CCDS DB by Protein ID:ENSP00000395337
Original member Current member EBI ENST00000542179.1 ENSP00000445331.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542179.1Link to Ensembl Protein Viewer:ENSP00000445331.1Re-query CCDS DB by Nucleotide ID:ENST00000542179Re-query CCDS DB by Protein ID:ENSP00000445331
Original member Current member NCBI NM_005566.4 NP_005557.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005566.4Link to Protein Sequence:NP_005557.1Re-query CCDS DB by Nucleotide ID:NM_005566Re-query CCDS DB by Protein ID:NP_005557Link to BLAST:NP_005557.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005557.1 332 P00338-1 332 100% 0 0

Chromosomal Locations for CCDS 7839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18396843 18396968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18399431 18399548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18400837 18401010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18402840 18403013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18403694 18403811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18405449 18405572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18407117 18407281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGCAACTCTAAAGGATCAGCTGATTTATAATCTTCTAAAGGAAGAACAGACCCCCCAGAATAAGATTA
CA
GTTGTTGGGGTTGGTGCTGTTGGCATGGCCTGTGCCATCAGTATCTTAATGAAGGACTTGGCAGATGA
A
CTTGCTCTTGTTGATGTCATCGAAGACAAATTGAAGGGAGAGATGATGGATCTCCAACATGGCAGCCTT
TTC
CTTAGAACACCAAAGATTGTCTCTGGCAAAGACTATAATGTAACTGCAAACTCCAAGCTGGTCATTA
TC
ACGGCTGGGGCACGTCAGCAAGAGGGAGAAAGCCGTCTTAATTTGGTCCAGCGTAACGTGAACATCTT
T
AAATTCATCATTCCTAATGTTGTAAAATACAGCCCGAACTGCAAGTTGCTTATTGTTTCAAATCCAGTG
GAT
ATCTTGACCTACGTGGCTTGGAAGATAAGTGGTTTTCCCAAAAACCGTGTTATTGGAAGCGGTTGCA
AT
CTGGATTCAGCCCGATTCCGTTACCTAATGGGGGAAAGGCTGGGAGTTCACCCATTAAGCTGTCATGG
G
TGGGTCCTTGGGGAACATGGAGATTCCAGTGTGCCTGTATGGAGTGGAATGAATGTTGCTGGTGTCTCT
CTG
AAGACTCTGCACCCAGATTTAGGGACTGATAAAGATAAGGAACAGTGGAAAGAGGTTCACAAGCAGG
TG
GTTGAGAGTGCTTATGAGGTGATCAAACTCAAAGGCTACACATCCTGGGCTATTGGACTCTCTGTAGC
A
GATTTGGCAGAGAGTATAATGAAGAATCTTAGGCGGGTGCACCCAGTTTCCACCATGATTAAGGGTCTT
TAC
GGAATAAAGGATGATGTCTTCCTTAGTGTTCCTTGCATTTTGGGACAGAATGGAATCTCAGACCTTG
TG
AAGGTGACTCTGACTTCTGAGGAAGAGGCCCGTTTGAAGAAGAGTGCAGATACACTTTGGGGGATCCA
A
AAGGAGCTGCAATTTTAA


Translation (332 aa):
MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL
F
LRTPKIVSGK
DYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPV
D
ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSS
VPVWSGMNVAGVS
L
KTLHPDLGTDKDKEQWKEVHKQVVE
SAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGL
Y
GIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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