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Report for CCDS7841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7841.1 Public Homo sapiens 11 LDHAL6A 24 110 108 CCDS HistoryNCBI Gene:160287Re-query CCDS DB by CCDS ID:7841.1Re-query CCDS DB by GeneID:160287See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280706.3 ENSP00000280706.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280706.3Link to Ensembl Protein Viewer:ENSP00000280706.2Re-query CCDS DB by Nucleotide ID:ENST00000280706Re-query CCDS DB by Protein ID:ENSP00000280706
Original member Current member EBI ENST00000396213.7 ENSP00000379516.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396213.7Link to Ensembl Protein Viewer:ENSP00000379516.3Re-query CCDS DB by Nucleotide ID:ENST00000396213Re-query CCDS DB by Protein ID:ENSP00000379516
Original member Current member NCBI NM_001144071.2 NP_001137543.1 Accepted alive Link to Nucleotide Sequence:NM_001144071.2Link to Protein Sequence:NP_001137543.1Re-query CCDS DB by Nucleotide ID:NM_001144071Re-query CCDS DB by Protein ID:NP_001137543Link to BLAST:NP_001137543.1
Original member Current member NCBI NM_144972.5 NP_659409.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144972.5Link to Protein Sequence:NP_659409.2Re-query CCDS DB by Nucleotide ID:NM_144972Re-query CCDS DB by Protein ID:NP_659409Link to BLAST:NP_659409.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137543.1 332 Q6ZMR3 332 100% 0 0
NP_659409.2 332 Q6ZMR3 332 100% 0 0

Chromosomal Locations for CCDS 7841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18456681 18456806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18463961 18464078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18465637 18465810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18475466 18475639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18476384 18476501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18477620 18477743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18478706 18478870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGCAACTATCAAGAGTGAACTTATTAAGAATTTCGCGGAAGAGGAGGCCATTCATCACAATAAGATCT
CC
ATTGTAGGAACTGGATCGGTTGGTGTGGCTTGTGCTATCAGCATCTTATTAAAAGGTTTGAGTGATGA
A
CTTGTCCTTGTGGATGTTGATGAAGGCAAACTGAAGGGTGAGACAATGGATCTTCAACATGGCAGCCCT
TTT
ATGAAAATGCCAAATATTGTCTCCAGCAAAGATTACCTGGTCACTGCAAACTCCAATCTAGTGATTA
TC
ACAGCAGGTGCACGCCAGAAAAAAGGAGAAACACGCCTTGATTTAGTCCAGCGAAATGTATCCATCTT
T
AAATTAATGATTCCCAATATTACCCAGTACAGTCCTCACTGCAAACTGCTTATTGTTACTAATCCAGTG
GAT
ATCTTAACTTATGTAGCCTGGAAGTTGAGTGGATTTCCCAAAAACCGTGTTATTGGAAGTGGTTGTA
AT
CTGGACTCTGCTCGTTTTCGTTACTTTATTGGGCAAAGGCTTGGCATCCACTCTGAAAGCTGTCATGG
G
CTGATCCTTGGAGAGCATGGCGACTCAAGTGTTCCTGTGTGGAGTGGTGTGAACATTGCTGGCGTCCCT
CTG
AAGGATCTGAACCCAGATATAGGAACTGATAAAGATCCTGAGCAGTGGGAAAATGTCCACAAAAAAG
TG
ATTTCCAGTGGCTATGAGATGGTCAAAATGAAAGGTTATACTTCTTGGGGCATTAGCCTATCTGTAGC
T
GATTTAACAGAAAGTATTTTGAAGAATCTTAGGAGAGTGCATCCAGTTTCTACCCTAAGTAAGGGCCTC
TAT
GGAATAAATGAAGACATATTCCTTAGTGTCCCATGTATCCTGGGAGAGAATGGTATCACAGACCTCA
TA
AAAGTAAAACTGACTCTTGAAGAGGAGGCCTGCTTGCAAAAGAGTGCAGAAACACTTTGGGAAATTCA
G
AAGGAGCTCAAGCTTTAA


Translation (332 aa):
MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKGETMDLQHGSP
F
MKMPNIVSSK
DYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLMIPNITQYSPHCKLLIVTNPV
D
ILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGIHSESCHGLILGEHGDSS
VPVWSGVNIAGVP
L
KDLNPDIGTDKDPEQWENVHKKVIS
SGYEMVKMKGYTSWGISLSVADLTESILKNLRRVHPVSTLSKGL
Y
GINEDIFLSVPCILGENGITDLIKVKLTLEEEACLQKSAETLWEIQKELKL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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