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Report for CCDS7852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7852.1 Public Homo sapiens 11 HTATIP2 24 110 108 CCDS HistoryNCBI Gene:10553Re-query CCDS DB by CCDS ID:7852.1Re-query CCDS DB by GeneID:10553See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443524.6 ENSP00000387876.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443524.6Link to Ensembl Protein Viewer:ENSP00000387876.2Re-query CCDS DB by Nucleotide ID:ENST00000443524Re-query CCDS DB by Protein ID:ENSP00000387876
Original member Current member EBI ENST00000451739.7 ENSP00000394259.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000451739.7Link to Ensembl Protein Viewer:ENSP00000394259.2Re-query CCDS DB by Nucleotide ID:ENST00000451739Re-query CCDS DB by Protein ID:ENSP00000394259
Original member Current member EBI ENST00000421577.6 ENSP00000397752.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421577.6Link to Ensembl Protein Viewer:ENSP00000397752.2Re-query CCDS DB by Nucleotide ID:ENST00000421577Re-query CCDS DB by Protein ID:ENSP00000397752
Original member Current member NCBI NM_001098521.2 NP_001091991.1 Accepted alive Link to Nucleotide Sequence:NM_001098521.2Link to Protein Sequence:NP_001091991.1Re-query CCDS DB by Nucleotide ID:NM_001098521Re-query CCDS DB by Protein ID:NP_001091991Link to BLAST:NP_001091991.1
Original member Current member NCBI NM_001098522.2 NP_001091992.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098522.2Link to Protein Sequence:NP_001091992.1Re-query CCDS DB by Nucleotide ID:NM_001098522Re-query CCDS DB by Protein ID:NP_001091992Link to BLAST:NP_001091992.1
Original member Current member NCBI NM_006410.5 NP_006401.3 Accepted alive Link to Nucleotide Sequence:NM_006410.5Link to Protein Sequence:NP_006401.3Re-query CCDS DB by Nucleotide ID:NM_006410Re-query CCDS DB by Protein ID:NP_006401Link to BLAST:NP_006401.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091991.1 242 Q9BUP3-1 242 100% 0 0
NP_001091992.1 242 Q9BUP3-1 242 100% 0 0
NP_006401.3 242 Q9BUP3-1 242 100% 0 0

Chromosomal Locations for CCDS 7852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 20364238 20364432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20367174 20367281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20376580 20376717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20382178 20382239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20382980 20383205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGCCGAAACAGAAGCCCTGTCGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTT
TGGGCGCCAGCGGAGAAACCGGCAGAGTGCTCTTAAAGGAAATCCTGGAGCAGGGCCTGTTTTCCAAAGT
CACGCTCATTGGCCGGAGGAAGCTCACCTTCGACGAGGAAGCTTATAAAAATGTGAATCAAGAAGTGGTG
GACTTTGAAAAGTTGGATGACTACGCCTCTGCCTTTCAAGGTCATGATGTTGGATTCTGTTGCCTGGGTA
CCACCAGAGGGAAAGCTGGGGCGGAGGGATTTGTTCGTGTTGACCGAGATTATGTGCTGAAGTCTGCAGA
GCTGGCAAAAGCTGGAGGGTGCAAACATTTCAACTTGCTATCCTCTAAAGGAGCTGATAAATCAAGCAAT
TTTTTATATCTACAAGTTAAGGGAGAAGTAGAAGCCAAGGTTGAAGAATTAAAATTTGATCGTTACTCTG
TATTTAGGCCTGGAGTTCTGTTATGTGATAGGCAAGAATCTCGCCCAGGTGAATGGCTGGTTAGAAAGTT
CTTTGGCTCCTTACCAGACTCTTGGGCCAGTGGGCATTCTGTGCCTGTGGTGACCGTGGTTAGAGCAATG
CTGAACAATGTGGTGAGACCAAGAGACAAGCAGATGGAACTGCTGGAGAACAAGGCCATCCATGACCTGG
GGAAAGCGCATGGCTCTCTCAAGCCATGA

Translation (242 aa):
MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVV
DFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSN
FLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAM
LNNVVRPRDKQMELLENKAIHDLGKAHGSLKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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