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Report for CCDS7852.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
7852.1 |
Public |
Homo sapiens |
11 |
HTATIP2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:10553](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:7852.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:10553](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 7852.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000443524.6 |
ENSP00000387876.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000443524.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000387876.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000443524](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000387876](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000451739.7 |
ENSP00000394259.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000451739.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000394259.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000451739](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000394259](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000421577.6 |
ENSP00000397752.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000421577.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000397752.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000421577](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000397752](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001098521.2 |
NP_001091991.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001098521.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001091991.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001098521](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001091991](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001091991.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001098522.2 |
NP_001091992.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001098522.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001091992.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001098522](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001091992](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001091992.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_006410.5 |
NP_006401.3 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_006410.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_006401.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_006410](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_006401](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_006401.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 7852.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (729 nt): ATGGCCGAAACAGAAGCCCTGTCGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTT TGGGCGCCAGCGGAGAAACCGGCAGAGTGCTCTTAAAGGAAATCCTGGAGCAGGGCCTGTTTTCCAAAGT CACGCTCATTGGCCGGAGGAAGCTCACCTTCGACGAGGAAGCTTATAAAAATGTGAATCAAGAAGTGGTG GACTTTGAAAAGTTGGATGACTACGCCTCTGCCTTTCAAGGTCATGATGTTGGATTCTGTTGCCTGGGTA CCACCAGAGGGAAAGCTGGGGCGGAGGGATTTGTTCGTGTTGACCGAGATTATGTGCTGAAGTCTGCAGA GCTGGCAAAAGCTGGAGGGTGCAAACATTTCAACTTGCTATCCTCTAAAGGAGCTGATAAATCAAGCAAT TTTTTATATCTACAAGTTAAGGGAGAAGTAGAAGCCAAGGTTGAAGAATTAAAATTTGATCGTTACTCTG TATTTAGGCCTGGAGTTCTGTTATGTGATAGGCAAGAATCTCGCCCAGGTGAATGGCTGGTTAGAAAGTT CTTTGGCTCCTTACCAGACTCTTGGGCCAGTGGGCATTCTGTGCCTGTGGTGACCGTGGTTAGAGCAATG CTGAACAATGTGGTGAGACCAAGAGACAAGCAGATGGAACTGCTGGAGAACAAGGCCATCCATGACCTGG GGAAAGCGCATGGCTCTCTCAAGCCATGA
Translation (242 aa): MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVV DFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSN FLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAM LNNVVRPRDKQMELLENKAIHDLGKAHGSLKP
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