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Report for CCDS7854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7854.1 Public Homo sapiens 11 SLC6A5 24 110 108 CCDS HistoryNCBI Gene:9152Re-query CCDS DB by CCDS ID:7854.1Re-query CCDS DB by GeneID:9152See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525748.6 ENSP00000434364.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000525748.6Link to Ensembl Protein Viewer:ENSP00000434364.2Re-query CCDS DB by Nucleotide ID:ENST00000525748Re-query CCDS DB by Protein ID:ENSP00000434364
Original member Current member NCBI NM_004211.5 NP_004202.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004211.5Link to Protein Sequence:NP_004202.4Re-query CCDS DB by Nucleotide ID:NM_004211Re-query CCDS DB by Protein ID:NP_004202Link to BLAST:NP_004202.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004202.4 797 Q9Y345-1 797 100% 0 0

Chromosomal Locations for CCDS 7854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 20599673 20599675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20601129 20601665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20604286 20604424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20607007 20607138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20607479 20607652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20614679 20614820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20617752 20617884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20626708 20626842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20627980 20628083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20630691 20630815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20636307 20636419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20637172 20637303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20638459 20638558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20646834 20646934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20652289 20652456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20654713 20654868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGATTGCAGTGCTCCCAAGGAAATGAATAAACTGCCAGCCAACAGCCCGGAGGCGGCGGCGGCGCAGG
GCCACCCGGATGGCCCATGCGCTCCCAGGACGAGCCCGGAGCAGGAGCTTCCCGCGGCTGCCGCCCCGCC
GCCGCCACGTGTGCCCAGGTCCGCTTCCACCGGCGCCCAAACTTTCCAGTCAGCGGACGCGCGAGCCTGC
GAGGCTGAGCGGCCAGGAGTGGGGTCTTGCAAACTCAGTAGCCCGCGGGCGCAGGCGGCCTCTGCAGCTC
TGCGGGACTTGAGAGAGGCGCAAGGCGCGCAGGCCTCGCCCCCTCCCGGGAGCTCCGGGCCCGGCAACGC
GCTGCACTGTAAGATCCCTTTTCTGCGAGGCCCGGAGGGGGATGCGAACGTGAGTGTGGGCAAGGGCACC
CTGGAGCGGAACAATACCCCTGTTGTGGGCTGGGTGAACATGAGCCAGAGCACCGTGGTGCTGGCCACGG
ATGGAATCACGTCCGTGCTCCCGGGCAGCGTGGCCACCGTTGCCACCCAGGAGGACGAGCAAGGGGATGA
GAATAAGGCCCGAGGGAACTGGTCCAGCAAACTGGACTTCATCCTGTCCATGGTGGGGTACGCAGTGGGG
CTGGGCAATGTCTGGAGGTTTCCCTACCTGGCCTTCCAGAACGGGGGAGGTGCTTTCCTCATCCCTTACC
TGATGATGCTGGCTCTGGCTGGATTACCCATCTTCTTCTTGGAGGTGTCGCTGGGCCAGTTTGCCAGCCA
GGGACCAGTGTCTGTGTGGAAGGCCATCCCAGCTCTACAAGGCTGTGGCATCGCGATGCTGATCATCTCT
GTCCTAATAGCCATATACTACAATGTGATTATTTGCTATACACTTTTCTACCTGTTTGCCTCCTTTGTGT
CTGTACTACCCTGGGGCTCCTGCAACAACCCTTGGAATACGCCAGAATGCAAAGATAAAACCAAACTTTT
ATTAGATTCCTGTGTTATCAGTGACCATCCCAAAATACAGATCAAGAACTCGACTTTCTGCATGACCGCT
TATCCCAACGTGACAATGGTTAATTTCACCAGCCAGGCCAATAAGACATTTGTCAGTGGAAGTGAAGAGT
ACTTCAAGTACTTTGTGCTGAAGATTTCTGCAGGGATTGAATATCCTGGCGAGATCAGGTGGCCACTAGC
TCTCTGCCTCTTCCTGGCTTGGGTCATTGTGTATGCATCATTGGCTAAAGGAATCAAGACTTCAGGAAAA
GTGGTGTACTTCACGGCCACGTTCCCGTATGTCGTACTCGTGATCCTCCTCATCCGAGGAGTCACCCTGC
CTGGAGCTGGAGCTGGGATCTGGTACTTCATCACACCCAAGTGGGAGAAACTCACGGATGCCACGGTGTG
GAAAGATGCTGCCACTCAGATTTTCTTCTCTTTATCTGCTGCATGGGGAGGCCTGATCACTCTCTCTTCT
TACAACAAATTCCACAACAACTGCTACAGGGACACTCTAATTGTCACCTGCACCAACAGTGCCACAAGCA
TCTTTGCCGGCTTCGTCATCTTCTCCGTTATCGGCTTCATGGCCAATGAACGCAAAGTCAACATTGAGAA
TGTGGCAGACCAAGGGCCAGGCATTGCATTTGTGGTTTACCCGGAAGCCTTAACCAGGCTGCCTCTCTCT
CCGTTCTGGGCCATCATCTTTTTCCTGATGCTCCTCACTCTTGGACTTGACACTATGTTTGCCACCATCG
AGACCATAGTGACCTCCATCTCAGACGAGTTTCCCAAGTACCTACGCACACACAAGCCAGTGTTTACTCT
GGGCTGCTGCATTTGTTTCTTCATCATGGGTTTTCCAATGATCACTCAGGGTGGAATTTACATGTTTCAG
CTTGTGGACACCTATGCTGCCTCCTATGCCCTTGTCATCATTGCCATTTTTGAGCTCGTGGGGATCTCTT
ATGTGTATGGCTTGCAAAGATTCTGTGAAGATATAGAGATGATGATTGGATTCCAGCCTAACATCTTCTG
GAAAGTCTGCTGGGCATTTGTAACCCCAACCATTTTAACCTTTATCCTTTGCTTCAGCTTTTACCAGTGG
GAGCCCATGACCTATGGCTCTTACCGCTATCCTAACTGGTCCATGGTGCTCGGATGGCTAATGCTCGCCT
GTTCCGTCATCTGGATCCCAATTATGTTTGTGATAAAAATGCATCTGGCCCCTGGAAGATTTATTGAGAG
GCTGAAGTTGGTGTGCTCGCCACAGCCGGACTGGGGCCCATTCTTAGCTCAACACCGCGGGGAGCGTTAC
AAGAACATGATCGACCCCTTGGGAACCTCTTCCTTGGGACTCAAACTGCCAGTGAAGGATTTGGAACTGG
GCACTCAGTGCTAG

Translation (797 aa):
MDCSAPKEMNKLPANSPEAAAAQGHPDGPCAPRTSPEQELPAAAAPPPPRVPRSASTGAQTFQSADARAC
EAERPGVGSCKLSSPRAQAASAALRDLREAQGAQASPPPGSSGPGNALHCKIPFLRGPEGDANVSVGKGT
LERNNTPVVGWVNMSQSTVVLATDGITSVLPGSVATVATQEDEQGDENKARGNWSSKLDFILSMVGYAVG
LGNVWRFPYLAFQNGGGAFLIPYLMMLALAGLPIFFLEVSLGQFASQGPVSVWKAIPALQGCGIAMLIIS
VLIAIYYNVIICYTLFYLFASFVSVLPWGSCNNPWNTPECKDKTKLLLDSCVISDHPKIQIKNSTFCMTA
YPNVTMVNFTSQANKTFVSGSEEYFKYFVLKISAGIEYPGEIRWPLALCLFLAWVIVYASLAKGIKTSGK
VVYFTATFPYVVLVILLIRGVTLPGAGAGIWYFITPKWEKLTDATVWKDAATQIFFSLSAAWGGLITLSS
YNKFHNNCYRDTLIVTCTNSATSIFAGFVIFSVIGFMANERKVNIENVADQGPGIAFVVYPEALTRLPLS
PFWAIIFFLMLLTLGLDTMFATIETIVTSISDEFPKYLRTHKPVFTLGCCICFFIMGFPMITQGGIYMFQ
LVDTYAASYALVIIAIFELVGISYVYGLQRFCEDIEMMIGFQPNIFWKVCWAFVTPTILTFILCFSFYQW
EPMTYGSYRYPNWSMVLGWLMLACSVIWIPIMFVIKMHLAPGRFIERLKLVCSPQPDWGPFLAQHRGERY
KNMIDPLGTSSLGLKLPVKDLELGTQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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