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Report for CCDS78541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78541.1 Public Mus musculus 1 Atp6v1h 23 108 98 CCDS HistoryNCBI Gene:108664Re-query CCDS DB by CCDS ID:78541.1Re-query CCDS DB by GeneID:108664See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192698.2 ENSMUSP00000141797.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192698.2Link to Ensembl Protein Viewer:ENSMUSP00000141797.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192698Re-query CCDS DB by Protein ID:ENSMUSP00000141797
Original member Current member NCBI NM_001310442.1 NP_001297371.1 Accepted alive Link to Nucleotide Sequence:NM_001310442.1Link to Protein Sequence:NP_001297371.1Re-query CCDS DB by Nucleotide ID:NM_001310442Re-query CCDS DB by Protein ID:NP_001297371Link to BLAST:NP_001297371.1

Chromosomal Locations for CCDS 78541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 5084451 5084563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5089009 5089111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5093363 5093452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5095615 5095728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5098029 5098133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5117390 5117487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5124277 5124469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5133084 5133262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5135812 5135937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5143750 5143851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5149948 5150061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 5162105 5162165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGACCAAGATGGACATTCGAGGTGCTGTGGATGCTGCTGTCCCAACTAACATCATTGCGGCCAAGGCTG
CTGAAGTTCGTGCCAACAAAGTGAACTGGCAGTCTTATCTTCAGGGGCAGATGATTTCTGCTGAAGATTG
TGAATTTATTCAAAGGTTTGAAATGAAAAGAAGTTCCGAGGACAAGCAAGAGATGCTTCAAACTGAAGGC
AGCCAGTGTGCTAAAACATTTATAAATCTGATGACGCACATCTCCAAAGAACAGACAGTGCAGTACATAC
TAACCATGGTTGACGATATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCGAAACG
AAGCAAGAGCACTGCCTGGCCATACTTCCTGCCAATGTTGAATCGCCAGGATCCCTTTACTGTTCATATG
GCAGCAAGAATTATCGCCAAGTTAGCTGCTTGGGGGAAAGAACTGATGGAAGGCAGTGACTTAAATTACT
ATTTCAATTGGATAAAAACTCAGCTGAGTTCACAGAGTTCTCAGTATGTGCAGTGTGTTGCTGGCTGTCT
GCAGCTGATGCTCCGGGTCAATGAGTACCGGTTTGCCTGGGTAGAAGCAGATGGAGTGAACTGTATAATG
GGCGTTTTGAGTAACAAGTGTGGTTTTCAACTTCAATACCAAATGATTTTTTCAATATGGCTCCTGGCAT
TCAGTCCTCAAATGTGTGAGCACCTTCGTCGCTATAATATCATTCCTGTTCTATCAGACATCCTTCAAGA
ATCTGTCAAAGAGAAAGTAACAAGAATCATTCTTGCAGCATTCCGGAATTTCTTAGAAAAATCAACGGAA
AGAGAAACTCGCCAAGAGTATGCTCTGGCTATGATTCAATGCAAAGTACTGAAACAGTTGGAGAATTTGG
AGCAGCAGAAGTATGATGATGAAGATATCAGTGAAGACATCAAATTTCTTTTGGAAAAACTTGGTGAGAG
TGTCCAGGACCTTAGCTCATTTGATGAATACAGTTCAGAACTTAAATCTGGAAGATTGGAATGGAGCCCT
GTACACAAGTCTGAGAAATTTTGGAGAGAAAATGCCGTGAGGTTGAATGAGAAGAACTATGAACTCTTGA
AAATCTTGACAAAACTTCTGGAGGTATCAGATGATCCACAAGTCTTAGCTGTTGCTGCTCACGATGTTGG
AGAATATGTCCGGCATTATCCCCGGGGAAAACGGGTTATTGAGCAGCTTGGTGGAAAGCAGTTGGTGATG
AACCACATGCACCATGAAGACCAGCAGGTTCGCTACAATGCTCTTCTGGCCGTGCAGAAGCTCATGGTGC
ACAACTGGGAATATCTTGGTAAACAACTACAGTCAGAGCAGCCTCAGACTGCTGCTGCTCGGAGCTGA

Translation (465 aa):
MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSSEDKQEMLQTEG
SQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHM
AARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIM
GVLSNKCGFQLQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTE
RETRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSP
VHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVM
NHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAAARS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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